diff options
Diffstat (limited to 'academic/pysam')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 7 | ||||
| -rw-r--r-- | academic/pysam/pysam.info | 8 |
2 files changed, 6 insertions, 9 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 4f6d0a4fd4..7d7fa44857 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam -VERSION=${VERSION:-0.23.0} +VERSION=${VERSION:-0.23.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -77,10 +77,7 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# pysam now at htslib-1.21; SBo-htslib is at 1.21: -# can use system htslib: -export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX -export HTSLIB_INCLUDE_DIR=/usr/include +# pysam linked to htslib-1.21; SBo-htslib is at 1.22 #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info index 7ebb05eb84..6f4a2a2732 100644 --- a/academic/pysam/pysam.info +++ b/academic/pysam/pysam.info @@ -1,10 +1,10 @@ PRGNAM="pysam" -VERSION="0.23.0" +VERSION="0.23.3" HOMEPAGE="https://github.com/pysam-developers/pysam" -DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.23.0.tar.gz" -MD5SUM="cb76ea7fcc9ff025f0f03d06e14b7c88" +DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.23.3.tar.gz" +MD5SUM="df44a9ab7bbf73d29e767e82de7b7227" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="htslib" +REQUIRES="" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |