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Diffstat (limited to 'academic/ncbi-rmblastn/README')
| -rw-r--r-- | academic/ncbi-rmblastn/README | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/academic/ncbi-rmblastn/README b/academic/ncbi-rmblastn/README new file mode 100644 index 000000000000..b203d952fa80 --- /dev/null +++ b/academic/ncbi-rmblastn/README @@ -0,0 +1,13 @@ +RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST +suite. The primary difference between this distribution and the NCBI +distribution is the addition of a new program "rmblastn" for use with +RepeatMasker and RepeatModeler. + +RMBlast supports RepeatMasker searches by adding a few necessary +features to the stock NCBI blastn program. These include: + +- Support for custom matrices ( without KA-Statistics ) +- Support for cross_match-like complexity adjusted scoring + (Cross_match is Phil Green's seeded smith-waterman search algorithm: + www.phrap.org ) +- Support for cross_match-like masklevel filtering. |