diff options
| -rw-r--r-- | academic/fastqc/doinst.sh | 5 | ||||
| -rw-r--r-- | academic/fastqc/fastqc.SlackBuild | 13 | ||||
| -rw-r--r-- | academic/fastqc/fastqc.info | 10 |
3 files changed, 18 insertions, 10 deletions
diff --git a/academic/fastqc/doinst.sh b/academic/fastqc/doinst.sh index 5fb28930db0b..d9483a16ab74 100644 --- a/academic/fastqc/doinst.sh +++ b/academic/fastqc/doinst.sh @@ -1,3 +1,8 @@ if [ -x /usr/bin/update-desktop-database ]; then /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 fi + +( cd usr/bin ; rm -rf fastqc ) +( cd usr/bin ; ln -sf ../share/java/fastqc/fastqc fastqc ) +( cd usr/doc/fastqc-0.11.8 ; rm -rf Help ) +( cd usr/doc/fastqc-0.11.8 ; ln -sf ../../share/java/fastqc/Help Help ) diff --git a/academic/fastqc/fastqc.SlackBuild b/academic/fastqc/fastqc.SlackBuild index 096d364dff05..72021c6af66a 100644 --- a/academic/fastqc/fastqc.SlackBuild +++ b/academic/fastqc/fastqc.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for fastqc -# Copyright 2015-2018 Petar Petrov slackalaxy@gmail.com +# Copyright 2015-2018 Petar Petrov slackalaxy@gmail.com; 2018 Rob van Nues sborg63.org # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -24,8 +24,8 @@ PRGNAM=fastqc SRCNAM=FastQC -VERSION=${VERSION:-0.11.7} -SRCVER=${SRCVER:-v0.11.7} +VERSION=${VERSION:-0.11.8} +SRCVER=${SRCVER:-v0.11.8} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -58,7 +58,7 @@ find -L . \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; install -D -m755 $PRGNAM $PKG/usr/share/java/$PRGNAM/$PRGNAM -cp -a Configuration net org Templates uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM +cp -a Configuration net org Templates Help uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM mkdir -p $PKG/usr/bin cd $PKG/usr/bin @@ -69,7 +69,10 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a Help *.txt $PKG/usr/doc/$PRGNAM-$VERSION +cd $PKG/usr/doc/$PRGNAM-$VERSION +ln -s ../../share/java/$PRGNAM/Help +cd - +cp -a *.txt $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild # Menu item and icon diff --git a/academic/fastqc/fastqc.info b/academic/fastqc/fastqc.info index 688ead331e4c..39ebe38dbe54 100644 --- a/academic/fastqc/fastqc.info +++ b/academic/fastqc/fastqc.info @@ -1,10 +1,10 @@ PRGNAM="fastqc" -VERSION="0.11.7" +VERSION="0.11.8" HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" -DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip" -MD5SUM="8fead05fa62c5e723f0d2157a9b5fcd4" +DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.8.zip" +MD5SUM="bdaf3b9fe957681b3a12349fdfa1c6c0" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" -MAINTAINER="Petar Petrov" -EMAIL="slackalaxy@gmail.com" +MAINTAINER="Rob van Nues" +EMAIL="sborg63@disroot.org" |