8 files changed, 0 insertions, 175 deletions
diff --git a/academic/TreeGraph/README b/academic/TreeGraph/README
deleted file mode 100644
index 9377b9be73..0000000000
--- a/academic/TreeGraph/README
+++ /dev/null
@@ -1,41 +0,0 @@
-TreeGraph (2): A feature rich and easy to use phylogenetic tree editor
-
-TreeGraph (2) is a is graphical editor for phylogenetic trees, which
-allows to apply various of graphical formats and edit operations and
-supports several (visible or invisible) annotations attached to nodes
-or branches. Data can be imported from many tree formats, tables and
-BayesTraits output.
-
-A key feature is the interactive comparison and combination of
-alternative topologies from different analyses.
-
-Key features
-- Read trees in Newick, Nexus format (including annotations in hot
-  comments), NeXML or PhyloXML
-- Import annotations from text files or combine information from
-  different phylogenetic analyses
-- An unlimited number of numerical or textual annotations on every
-  branch
-- Export trees to various vector and (anti-aliased) pixel graphic
-  formats (e.g. PDF, SVG, EMF or PNG)
-- Many global and element specific formats like line width or color
-  and text formats
-- Versatile editing and formatting options, such as automatically
-  setting branch widths or colors according to the value of any
-  attached data
-- Editing operations like rerooting, ladderizing or moving and
-  collapsing nodes or copying or manually creating whole clades
-- Generate commands and import data for ancestral state reconstruction
-
-Citation
-TreeGraph 2 has been published in BMC Bioinformatics:
-Stöver BC, Müller KF: TreeGraph 2: Combining and visualizing evidence
-from different phylogenetic analyses. BMC Bioinformatics 2010, 11:7
-DOI: 10.1186/1471-2105-11-7
-
-
-IMPORTANT NOTE ABOUT THE DOWNLOAD
-
-If you have trouble with the download, please use a browser to visit
-the TreeGraph download page at http://treegraph.bioinfweb.info/Download
-and click the download link.
diff --git a/academic/TreeGraph/TreeGraph b/academic/TreeGraph/TreeGraph
deleted file mode 100644
index aee6d91990..0000000000
--- a/academic/TreeGraph/TreeGraph
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/sh
-
-cd /usr/share/java/TreeGraph
-java -jar TreeGraph.jar &
diff --git a/academic/TreeGraph/TreeGraph.SlackBuild b/academic/TreeGraph/TreeGraph.SlackBuild
deleted file mode 100644
index f80eaedf9d..0000000000
--- a/academic/TreeGraph/TreeGraph.SlackBuild
+++ /dev/null
@@ -1,90 +0,0 @@
-#!/bin/bash
-
-# Slackware build script for TreeGraph
-
-# Copyright 2018-2021 Petar Petrov slackalaxy@gmail.com
-# All rights reserved.
-#
-# Redistribution and use of this script, with or without modification, is
-# permitted provided that the following conditions are met:
-#
-# 1. Redistributions of this script must retain the above copyright
-#    notice, this list of conditions and the following disclaimer.
-#
-#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
-#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-cd $(dirname $0) ; CWD=$(pwd)
-
-PRGNAM=TreeGraph
-VERSION=${VERSION:-2.15.0_887_beta}
-BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
-PKGTYPE=${PKGTYPE:-tgz}
-
-ZIPVER=2.15.0-887_beta
-ARCH=noarch
-
-# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
-# the name of the created package would be, and then exit. This information
-# could be useful to other scripts.
-if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
-  echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
-  exit 0
-fi
-
-TMP=${TMP:-/tmp/SBo}
-PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
-
-set -e
-
-rm -rf $PKG
-mkdir -p $TMP $PKG $OUTPUT
-cd $TMP
-rm -rf $PRGNAM-$VERSION
-mkdir -p $PRGNAM-$VERSION
-cd $PRGNAM-$VERSION
-
-# Use "bsdtar" instead of "unzip". The latter has some bug which
-# prevented the script from running past the unzipping step. Or maybe
-# I did sth wrong here...
-bsdtar -xf $CWD/${PRGNAM}_${ZIPVER}.zip
-chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-  -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-
-# There are a bunch of LICENSE-* txt files, however leave them there,
-# otherwise the program will fail to start. I tried moving them to
-# $PKG/usr/doc/$PRGNAM-$VERSION and had an error message upon start.
-mkdir -p $PKG/usr/share/java/$PRGNAM/lib/{batik,errorReporter}
-cp -a icons lib $PRGNAM.jar $PKG/usr/share/java/$PRGNAM
-
-# Install our simple wrapper
-install -D -m755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM
-
-# Include our own icon and desktop file
-mkdir -p $PKG/usr/share/{applications,pixmaps}
-cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
-cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
-
-mkdir -p $PKG/install
-cat $CWD/slack-desc > $PKG/install/slack-desc
-cat $CWD/doinst.sh > $PKG/install/doinst.sh
-
-cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE
diff --git a/academic/TreeGraph/TreeGraph.desktop b/academic/TreeGraph/TreeGraph.desktop
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index 51e4d0a549..0000000000
--- a/academic/TreeGraph/TreeGraph.desktop
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@@ -1,8 +0,0 @@
-[Desktop Entry]
-Categories=Education;
-Comment=A feature rich and easy to use phylogenetic tree editor
-Exec=TreeGraph
-Icon=TreeGraph
-Name=TreeGraph 2
-StartupNotify=false
-Type=Application
diff --git a/academic/TreeGraph/TreeGraph.info b/academic/TreeGraph/TreeGraph.info
deleted file mode 100644
index 9adcb3a231..0000000000
--- a/academic/TreeGraph/TreeGraph.info
+++ /dev/null
@@ -1,10 +0,0 @@
-PRGNAM="TreeGraph"
-VERSION="2.15.0_887_beta"
-HOMEPAGE="http://treegraph.bioinfweb.info/"
-DOWNLOAD="http://treegraph.bioinfweb.info/Download/Complete/TreeGraph_2.15.0-887_beta.zip"
-MD5SUM="4ca90fbb7cb7aae9a37d99ac742bd22f"
-DOWNLOAD_x86_64=""
-MD5SUM_x86_64=""
-REQUIRES="zulu-openjdk11"
-MAINTAINER="Petar Petrov"
-EMAIL="slackalaxy@gmail.com"
diff --git a/academic/TreeGraph/TreeGraph.png b/academic/TreeGraph/TreeGraph.png
deleted file mode 100644
index 25b57a6add..0000000000
--- a/academic/TreeGraph/TreeGraph.png
+++ /dev/null
diff --git a/academic/TreeGraph/doinst.sh b/academic/TreeGraph/doinst.sh
deleted file mode 100644
index 5fb28930db..0000000000
--- a/academic/TreeGraph/doinst.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-if [ -x /usr/bin/update-desktop-database ]; then
-  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
-fi
diff --git a/academic/TreeGraph/slack-desc b/academic/TreeGraph/slack-desc
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index c4af759a8e..0000000000
--- a/academic/TreeGraph/slack-desc
+++ /dev/null
@@ -1,19 +0,0 @@
-# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description.
-# Line up the first '|' above the ':' following the base package name, and
-# the '|' on the right side marks the last column you can put a character in.
-# You must make exactly 11 lines for the formatting to be correct.  It's also
-# customary to leave one space after the ':' except on otherwise blank lines.
-
-         |-----handy-ruler------------------------------------------------------|
-TreeGraph: TreeGraph (A feature rich phylogenetic tree editor)
-TreeGraph:
-TreeGraph: TreeGraph 2 is a is graphical editor for phylogenetic trees,
-TreeGraph: which allows to apply various of graphical formats and edit
-TreeGraph: operations and supports several annotations attached  to nodes
-TreeGraph: or branches. Data can be imported from many tree formats,
-TreeGraph: tables and BayesTraits output. A key feature is the interactive
-TreeGraph: comparison and combination of alternative topologies from
-TreeGraph: different analyses.
-TreeGraph:
-TreeGraph: http://treegraph.bioinfweb.info/