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| author | Petar Petrov <slackalaxy@gmail.com> | 2021-05-18 17:04:02 +0300 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2021-05-18 23:40:17 +0700 |
| commit | c49534c0a6a61ac86a62c7f344ce58df5dbe560f (patch) | |
| tree | fcd8356b99f379862b87c690d27f8f9f16ba7cbb /academic/vCAPS_coevolution | |
| parent | ba506941e57a397ef4f01bca1434d56ad63ec4d4 (diff) | |
academic/vCAPS_coevolution: update README
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/vCAPS_coevolution')
| -rw-r--r-- | academic/vCAPS_coevolution/README | 13 | ||||
| -rw-r--r-- | academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild | 4 |
2 files changed, 10 insertions, 7 deletions
diff --git a/academic/vCAPS_coevolution/README b/academic/vCAPS_coevolution/README index 51350cd21e07d..27ebb623a0450 100644 --- a/academic/vCAPS_coevolution/README +++ b/academic/vCAPS_coevolution/README @@ -13,11 +13,14 @@ In addition, a test which assesses whether two proteins are interacting is implemented. NOTE: -This applies an _unofficial_ patch by Petrov et al 2020, to enable more -verbose output of the program, including CAPS generated phylogenetic -trees and p-values of the pairwise results. The produced executable is -called "vCAPS" and can be installed along "caps" from CAPS_coevolution. -Building CAPS from source requires the Bio++ 1.9 suite. +This applies an _unofficial_ patch to enable more verbose output of the +program, including CAPS generated phylogenetic trees and p-values of the +pairwise results. The produced executable is called "vCAPS" and can be +installed along "caps" from CAPS_coevolution. Building CAPS from source +requires the Bio++ 1.9 suite, also available at SBo, which can be safely +installed along the current version. Fore details of the patch see pre- +print at bioRxiv by Petrov et al.: +https://doi.org/10.1101/2020.09.29.315374 CITING: CAPS: coevolution analysis using protein sequences. Fares MA, McNally D. diff --git a/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild b/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild index bdd3b3e79482e..ee8ff07353f4c 100644 --- a/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild +++ b/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for vCAPS_coevolution -# Copyright 2020 Petar Petrov slackalaxy@gmail.com +# Copyright 2020-2021 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -58,7 +58,7 @@ else LIBDIRSUFFIX="" fi -# This is needed for vCAPS to find its libraries at runtime. Thanks Urachlay! +# This is needed for vCAPS to find its libraries at runtime. Thanks Urchlay! LIBDIRPATH="-Wl,-rpath,/usr/lib${LIBDIRSUFFIX}/Bpp1.9" set -e |