From c49534c0a6a61ac86a62c7f344ce58df5dbe560f Mon Sep 17 00:00:00 2001 From: Petar Petrov Date: Tue, 18 May 2021 17:04:02 +0300 Subject: academic/vCAPS_coevolution: update README Signed-off-by: Willy Sudiarto Raharjo --- academic/vCAPS_coevolution/README | 13 ++++++++----- academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild | 4 ++-- 2 files changed, 10 insertions(+), 7 deletions(-) (limited to 'academic/vCAPS_coevolution') diff --git a/academic/vCAPS_coevolution/README b/academic/vCAPS_coevolution/README index 51350cd21e07..27ebb623a045 100644 --- a/academic/vCAPS_coevolution/README +++ b/academic/vCAPS_coevolution/README @@ -13,11 +13,14 @@ In addition, a test which assesses whether two proteins are interacting is implemented. NOTE: -This applies an _unofficial_ patch by Petrov et al 2020, to enable more -verbose output of the program, including CAPS generated phylogenetic -trees and p-values of the pairwise results. The produced executable is -called "vCAPS" and can be installed along "caps" from CAPS_coevolution. -Building CAPS from source requires the Bio++ 1.9 suite. +This applies an _unofficial_ patch to enable more verbose output of the +program, including CAPS generated phylogenetic trees and p-values of the +pairwise results. The produced executable is called "vCAPS" and can be +installed along "caps" from CAPS_coevolution. Building CAPS from source +requires the Bio++ 1.9 suite, also available at SBo, which can be safely +installed along the current version. Fore details of the patch see pre- +print at bioRxiv by Petrov et al.: +https://doi.org/10.1101/2020.09.29.315374 CITING: CAPS: coevolution analysis using protein sequences. Fares MA, McNally D. diff --git a/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild b/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild index bdd3b3e79482..ee8ff07353f4 100644 --- a/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild +++ b/academic/vCAPS_coevolution/vCAPS_coevolution.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for vCAPS_coevolution -# Copyright 2020 Petar Petrov slackalaxy@gmail.com +# Copyright 2020-2021 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -58,7 +58,7 @@ else LIBDIRSUFFIX="" fi -# This is needed for vCAPS to find its libraries at runtime. Thanks Urachlay! +# This is needed for vCAPS to find its libraries at runtime. Thanks Urchlay! LIBDIRPATH="-Wl,-rpath,/usr/lib${LIBDIRSUFFIX}/Bpp1.9" set -e -- cgit v1.2.3