diff options
| author | brobr <sborg63@disroot.org> | 2021-11-15 01:23:36 +0000 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2021-11-16 13:14:06 +0700 |
| commit | c85123441b4d32f9a332c0d826a492716ba5fc0c (patch) | |
| tree | abca04b933cf6e6d4d073fbe0fc7f81d5bfc9a44 /academic/pysam | |
| parent | a2883f1b981d0b36208c49e11fa70782e8952754 (diff) | |
academic/pysam: use packaged htslib 1.13
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pysam')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 55994c96949e1..7e991b8f382b1 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -80,10 +80,10 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -### pysam linked to htslib-1.13; SBo-htslib is at 1.13: -##use system htslib: -export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX -export HTSLIB_INCLUDE_DIR=/usr/include +### pysam linked to htslib-1.13; SBo-htslib is at 1.14: +### for use system htslib: +#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +#export HTSLIB_INCLUDE_DIR=/usr/include #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* |