diff options
| author | brobr <sborg63@disroot.org> | 2025-03-30 15:12:01 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2025-03-31 08:17:12 +0700 |
| commit | 53d8d2c07950751946c1d65a1a3cb98a095565bd (patch) | |
| tree | 786a0cdf8cbdf1fda3c6e42531e04aaa9b27b95b /academic/pysam/pysam.SlackBuild | |
| parent | 94edd70f436fd39e0eca3631307bb04790612376 (diff) | |
academic/pysam: upgraded to version 0.23.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pysam/pysam.SlackBuild')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 11 |
1 files changed, 7 insertions, 4 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index b0b447ac98..4f6d0a4fd4 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for pysam -# Copyright 2017-2023 Rob van Nues +# Copyright 2017-2025 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam -VERSION=${VERSION:-0.22.1} +VERSION=${VERSION:-0.23.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -77,7 +77,10 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# pysam linked to htslib-1.17; SBo-htslib is at 1.18 +# pysam now at htslib-1.21; SBo-htslib is at 1.21: +# can use system htslib: +export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +export HTSLIB_INCLUDE_DIR=/usr/include #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* @@ -89,7 +92,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - README.rst INSTALL COPYING \ + README.rst COPYING \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild |