diff options
| author | brobr <sborg63@disroot.org> | 2022-05-19 23:53:21 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2022-05-21 08:25:05 +0700 |
| commit | 215dfddbe284fa193a46b2791357387f1cd31cdf (patch) | |
| tree | 896b2c9cb81f089906ab240c941763f4fc62eeca /academic/pysam/pysam.SlackBuild | |
| parent | 6022d411cbf5757090d7e84c8b6561565e6d2841 (diff) | |
academic/pysam: Updated for version 0.19.0.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pysam/pysam.SlackBuild')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 11 |
1 files changed, 8 insertions, 3 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 369da78f83c8..2489d6cd265b 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for pysam -# Copyright 2017-2021 Rob van Nues +# Copyright 2017-2022 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,8 +25,8 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam -VERSION=${VERSION:-0.18.0} -BUILD=${BUILD:-2} +VERSION=${VERSION:-0.19.0} +BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,6 +80,11 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +# pysam now at htslib-1.15; SBo-htslib is at 1.15.1: +# can use system htslib: +export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +export HTSLIB_INCLUDE_DIR=/usr/include + #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* |