diff options
| author | Rob van Nues <sborg63@disroot.org> | 2018-07-06 06:29:27 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2018-07-07 06:54:17 +0700 |
| commit | 7240d51d0c1534f9b7b73458b29159dee1fb6329 (patch) | |
| tree | 8d13c79eb1fa4d21e8d8064bb3e33b39a5dc66e4 /academic/STAR/STAR.SlackBuild | |
| parent | bf5695bd8d62f073d40b8750eeb6361481ff7ea9 (diff) | |
academic/STAR: Update Script.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/STAR/STAR.SlackBuild')
| -rw-r--r-- | academic/STAR/STAR.SlackBuild | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/academic/STAR/STAR.SlackBuild b/academic/STAR/STAR.SlackBuild index aa89b2927f9c..d6f0453abe39 100644 --- a/academic/STAR/STAR.SlackBuild +++ b/academic/STAR/STAR.SlackBuild @@ -63,9 +63,15 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# https://sources.debian.org/data/main/r/rna-star/2.6.0b+dfsg-1/debian/patches/reproducible.patch -# (with minor modification) -patch -p1 < $CWD/reproducible.patch +# for using shared, externally-installed htslib (as done on debian) +#rm -rf htslib +# from https://salsa.debian.org/med-team/rna-star/tree/master/debian/patches +#patch < $CWD/donotuse_own_htslib.patch + +# but Alex Dobin, the developer of STAR does not advise this due to hacks he made in htslib +# https://github.com/alexdobin/STAR/issues/351 +# https://github.com/alexdobin/STAR/issues/447 +#so let's forget about this for now cd source |