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| author | Petar Petrov <slackalaxy@gmail.com> | 2023-09-14 21:24:52 +0900 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2023-09-17 00:10:17 +0700 |
| commit | 529d47241a3618e512b52b3c9d8d3ac4103157dc (patch) | |
| tree | b4f145bea647c5ccfccc31ab12b2459e43c3954d /academic/RepeatMasker/README.SLACKWARE | |
| parent | a6bdfcdae6e8c8eca87392673f87fd9c88a9591b (diff) | |
| download | slackbuilds-529d47241a3618e512b52b3c9d8d3ac4103157dc.tar.xz | |
academic/RepeatMasker: Updated for version 4.1.5.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/RepeatMasker/README.SLACKWARE')
| -rw-r--r-- | academic/RepeatMasker/README.SLACKWARE | 23 |
1 files changed, 7 insertions, 16 deletions
diff --git a/academic/RepeatMasker/README.SLACKWARE b/academic/RepeatMasker/README.SLACKWARE index dd3313fd62f6..0e92803b9ecc 100644 --- a/academic/RepeatMasker/README.SLACKWARE +++ b/academic/RepeatMasker/README.SLACKWARE @@ -1,31 +1,22 @@ -After install go fo /opt/RepeatMasker and run the RepeatMasker -Configuration Program: +After install go to /opt/RepeatMasker and run the Configuration Program: # perl ./configure -Paths are as follows: - -**PERL PROGRAM** -/usr/bin/perl - -**REPEATMASKER INSTALLATION DIRECTORY** -/opt/RepeatMasker - -**TRF PROGRAM** -/usr/bin/trf +* The full path including the name for the TRF program. +TRF_PRGM: /usr/bin/trf Add a Search Engine: 1. CrossMatch: you should obtain this yourself, with the proper license, following the instructions here http://www.phrap.org/ 2. RMBlast - NCBI Blast with RepeatMasker extensions: this is available from SBo. -3. WUBlast/ABBlast (required by DupMasker): you should obtain this +3. HMMER3.1 & DFAM: this is available from SBo. +4. ABBlast/WUBlast (required by DupMasker): you should obtain this yourself, with the proper license, following the instructions here https://blast.advbiocomp.com/licensing/ -4. HMMER3.1 & DFAM: this is available from SBo. -**RMBlast (rmblastn) INSTALLATION PATH** +* RMBlast (rmblastn) INSTALLATION PATH /usr/bin -**HMMER INSTALLATION PATH** +* HMMER INSTALLATION PATH /usr/bin |