diff options
author | Matteo Bernardini <ponce@slackbuilds.org> | 2022-02-27 08:56:45 +0100 |
---|---|---|
committer | Robby Workman <rworkman@slackbuilds.org> | 2022-02-27 22:29:03 -0600 |
commit | d8885706abdf2f9c404a9a4de576912640472435 (patch) | |
tree | dba410ba861e90f42e822ba1a653606436da7c14 | |
parent | e2621e4656fed910dbf87bf7db93c4be916bc7ed (diff) |
academic/bpp-popgen: Removed (ftb + no active maintainer).
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
-rw-r--r-- | academic/bpp-popgen/README | 8 | ||||
-rw-r--r-- | academic/bpp-popgen/bpp-popgen.SlackBuild | 106 | ||||
-rw-r--r-- | academic/bpp-popgen/bpp-popgen.info | 10 | ||||
-rw-r--r-- | academic/bpp-popgen/slack-desc | 19 |
4 files changed, 0 insertions, 143 deletions
diff --git a/academic/bpp-popgen/README b/academic/bpp-popgen/README deleted file mode 100644 index 0772158a827a1..0000000000000 --- a/academic/bpp-popgen/README +++ /dev/null @@ -1,8 +0,0 @@ -Bio++ is a set of C++ libraries for Bioinformatics, including sequence -analysis, phylogenetics, molecular evolution and population genetics. -Bio++ is Object Oriented and is designed to be both easy to use and -computer efficient. Bio++ intends to help programmers to write -computer expensive programs, by providing them a set of re-usable -tools. - -This contains the Bio++ Population Genetics Library. diff --git a/academic/bpp-popgen/bpp-popgen.SlackBuild b/academic/bpp-popgen/bpp-popgen.SlackBuild deleted file mode 100644 index da35866122d99..0000000000000 --- a/academic/bpp-popgen/bpp-popgen.SlackBuild +++ /dev/null @@ -1,106 +0,0 @@ -#!/bin/bash - -# Slackware build script for bpp-popgen - -# Copyright 2017-2021 Petar Petrov slackalaxy@gmail.com -# All rights reserved. -# -# Redistribution and use of this script, with or without modification, is -# permitted provided that the following conditions are met: -# -# 1. Redistributions of this script must retain the above copyright -# notice, this list of conditions and the following disclaimer. -# -# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED -# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF -# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO -# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, -# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, -# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; -# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, -# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR -# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF -# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - -cd $(dirname $0) ; CWD=$(pwd) - -PRGNAM=bpp-popgen -VERSION=${VERSION:-2.4.1} -BUILD=${BUILD:-1} -TAG=${TAG:-_SBo} -PKGTYPE=${PKGTYPE:-tgz} - -if [ -z "$ARCH" ]; then - case "$( uname -m )" in - i?86) ARCH=i586 ;; - arm*) ARCH=arm ;; - *) ARCH=$( uname -m ) ;; - esac -fi - -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. -if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then - echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" - exit 0 -fi - -TMP=${TMP:-/tmp/SBo} -PKG=$TMP/package-$PRGNAM -OUTPUT=${OUTPUT:-/tmp} - -if [ "$ARCH" = "i586" ]; then - SLKCFLAGS="-O2 -march=i586 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "i686" ]; then - SLKCFLAGS="-O2 -march=i686 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "x86_64" ]; then - SLKCFLAGS="-O2 -fPIC" - LIBDIRSUFFIX="64" -else - SLKCFLAGS="-O2" - LIBDIRSUFFIX="" -fi - -set -e - -rm -rf $PKG -mkdir -p $TMP $PKG $OUTPUT -cd $TMP -rm -rf $PRGNAM-$VERSION -tar xvf $CWD/$PRGNAM-$VERSION.tar.gz -cd $PRGNAM-$VERSION -chown -R root:root . -find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ - -o -perm 511 \) -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; - -sed -i "s|cmake-package-location lib/cmake|cmake-package-location lib${LIBDIRSUFFIX}/cmake|" CMakeLists.txt - -mkdir -p build -cd build - cmake \ - -DCMAKE_FLAGS:STRING="$SLKCFLAGS" \ - -DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS" \ - -DCMAKE_INSTALL_PREFIX=/usr \ - -DCMAKE_BUILD_TYPE=Release .. - make - make install DESTDIR=$PKG -cd .. - -find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ - | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true - -mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a AUTHORS.txt ChangeLog COPYING.txt INSTALL.txt $PKG/usr/doc/$PRGNAM-$VERSION -cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild - -mkdir -p $PKG/install -cat $CWD/slack-desc > $PKG/install/slack-desc - -cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE diff --git a/academic/bpp-popgen/bpp-popgen.info b/academic/bpp-popgen/bpp-popgen.info deleted file mode 100644 index 66439c4bbc0a1..0000000000000 --- a/academic/bpp-popgen/bpp-popgen.info +++ /dev/null @@ -1,10 +0,0 @@ -PRGNAM="bpp-popgen" -VERSION="2.4.1" -HOMEPAGE="https://github.com/BioPP/bpp-popgen/" -DOWNLOAD="https://github.com/BioPP/bpp-popgen/archive/v2.4.1/bpp-popgen-2.4.1.tar.gz" -MD5SUM="cdc84495e251b6ff4260385adecbea28" -DOWNLOAD_x86_64="" -MD5SUM_x86_64="" -REQUIRES="bpp-seq" -MAINTAINER="Petar Petrov" -EMAIL="slackalaxy@gmail.com" diff --git a/academic/bpp-popgen/slack-desc b/academic/bpp-popgen/slack-desc deleted file mode 100644 index f59a1bdccd815..0000000000000 --- a/academic/bpp-popgen/slack-desc +++ /dev/null @@ -1,19 +0,0 @@ -# HOW TO EDIT THIS FILE: -# The "handy ruler" below makes it easier to edit a package description. -# Line up the first '|' above the ':' following the base package name, and -# the '|' on the right side marks the last column you can put a character in. -# You must make exactly 11 lines for the formatting to be correct. It's also -# customary to leave one space after the ':' except on otherwise blank lines. - - |-----handy-ruler------------------------------------------------------| -bpp-popgen: bpp-popgen (Bio++ Population Genetics Library) -bpp-popgen: -bpp-popgen: Contains the Bio++ Population Genetics Library. -bpp-popgen: -bpp-popgen: Git: https://github.com/BioPP/bpp-popgen -bpp-popgen: -bpp-popgen: -bpp-popgen: -bpp-popgen: -bpp-popgen: -bpp-popgen: |