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#!/bin/sh
# Slackware build script for genpak
# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
# hereby submitted to the public domain
# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
PRGNAM=genpak
VERSION=${VERSION:-0.26}
BUILD=${BUILD:-3}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
i?86) ARCH=i486 ;;
arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;;
esac
fi
CWD=$(pwd)
TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
if [ "$ARCH" = "i486" ]; then
SLKCFLAGS="-O2 -march=i486 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "x86_64" ]; then
SLKCFLAGS="-O2 -fPIC"
LIBDIRSUFFIX="64"
else
SLKCFLAGS="-O2"
LIBDIRSUFFIX=""
fi
set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf gp-$VERSION
tar xvf $CWD/gp-$VERSION.tgz
cd gp-$VERSION
chown -R root:root .
find . \
\( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
-exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
-exec chmod 644 {} \;
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile
# Correct libdir
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" Makefile
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.c
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.h
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
make
# Makefile does not support "make DESTDIR install". So...
cd ./src
install -D -m755 gp_acc $PKG/usr/bin/gp_acc
install -D -m755 gp_adjust $PKG/usr/bin/gp_adjust
install -D -m755 gp_cdndev $PKG/usr/bin/gp_cdndev
install -D -m755 gp_cusage $PKG/usr/bin/gp_cusage
install -D -m755 gp_digest $PKG/usr/bin/gp_digest
install -D -m755 gp_dimer $PKG/usr/bin/gp_dimer
install -D -m755 gp_findorf $PKG/usr/bin/gp_findorf
install -D -m755 gp_gc $PKG/usr/bin/gp_gc
install -D -m755 gp_getseq $PKG/usr/bin/gp_getseq
install -D -m755 gp_matrix $PKG/usr/bin/gp_matrix
install -D -m755 gp_mkmtx $PKG/usr/bin/gp_mkmtx
install -D -m755 gp_pars $PKG/usr/bin/gp_pars
install -D -m755 gp_pattern $PKG/usr/bin/gp_pattern
install -D -m755 gp_primer $PKG/usr/bin/gp_primer
install -D -m755 gp_qs $PKG/usr/bin/gp_qs
install -D -m755 gp_randseq $PKG/usr/bin/gp_randseq
install -D -m755 gp_scan $PKG/usr/bin/gp_scan
install -D -m755 gp_seq2prot $PKG/usr/bin/gp_seq2prot
install -D -m755 gp_shift $PKG/usr/bin/gp_shift
install -D -m755 gp_slen $PKG/usr/bin/gp_slen
install -D -m755 gp_tm $PKG/usr/bin/gp_tm
install -D -m755 gp_trimer $PKG/usr/bin/gp_trimer
cd ../data
install -D -m644 ecoli.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/ecoli.mtx
install -D -m644 enzyme.enz $PKG/usr/lib${LIBDIRSUFFIX}/genpak/enzyme.enz
install -D -m644 myco.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.cdn
install -D -m644 myco.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.mtx
install -D -m644 myco0 $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco0
install -D -m644 sample.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/sample.seq
install -D -m644 standard.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/standard.cdn
install -D -m644 mporfs.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/mporfs.seq
# Put man pages to their proper place
mkdir -p $PKG/usr/man/man1
cp ../man1/* $PKG/usr/man/man1
cd ..
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
find $PKG/usr/man -type f -exec gzip -9 {} \;
for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
html CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT \
$PKG/usr/doc/$PRGNAM-$VERSION/
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
mkdir -p $PKG/install
cat $CWD/slack-desc > $PKG/install/slack-desc
cd $PKG
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
|
