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The EMBASSY package includes the following:
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DOMAINATRIX Previous distributions of the protein domain programs from
Jon Ison's group were in a single EMBASSY package. This is now split
into 5 packages according to function.
Application details and documentation for DOMAINATRIX
DOMAINATRIX is available as a Beta release 0.1.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMAINATRIX-0.1.0.tar.gz
Application details and documentation for DOMALIGN
DOMALIGN is available as a Beta release 0.1.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMALIGN-0.1.0.tar.gz
Application details and documentation for DOMSEARCH
DOMSEARCH is available as a Beta release 0.1.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMSEARCH-0.1.0.tar.gz
Application details and documentation for SIGNATURE
SIGNATURE is available as a Beta release 0.1.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file SIGNATURE-0.1.0.tar.gz
Application details and documentation for STRUCTURE
STRUCTURE is available as a Beta release 0.1.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file STRUCTURE-0.1.0.tar.gz EMNU
(EMBOSS Menu is Not UNIX) Application details and documentation for EMNU
EMNU is available as release 1.05 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file EMNU-1.05.tar.gz ESIM4
(EMBOSS version of SIM4) Application details and documentation for ESIM4
ESIM4 is available as release 1.0.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file ESIM4-1.0.0.tar.gz HMMER
(EMBOSS version of HMMER 2.1.1 - PLEASE USE HMMERNEW) Application details
and documentation for HMMER
HMMER is available as release 2.1.1 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.1.1.tar.gz HMMERNEW
(EMBOSS version of HMMER 2.3.2) Application details and documentation
for HMMERNEW
HMMER 2.3.2 is available from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.3.2.tar.gz
MEME (previous EMBOSS version of MEME 2.3.1) Application details and
documentation for MEME
MEME is available as release 2.3.1 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEME-2.3.1.tar.gz MEMENEW
(EMBOSS version of MEME 3.0.14) Application details and documentation
for MEMENEW which wraps release 3.0.14 of the Meme package
MEMENEW is available as release 0.1.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEMENEW-0.1.0.tar.gz
MSE (A Multiple Sequence Screen Editor for Biological Sequences.)
Application details and documentation for MSE
MSE is available as release 1.0.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file MSE-1.0.0.tar.gz MYEMBOSS
(For sites to build their own applications) Application details and
documentation for MYEMBOSS
MYEMBOSS provides a directory structure and makefile stubs for developing
your own applications more easily than in versions before 3.0.0.
MYEMBOSS requires autoconf, automake and libtool to be installed. See
the INSTALL file for more informations.
MYEMBOSS is available as release 1.0.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file MYEMBOSS-1.0.0.tar.gz PHYLIP
(Phylogeny Inference Package) Application details and documentation for
PHYLIP and PHYLIPNEW.
PHYLIP 3.572 was available as an EMBASSY package with previous
releases. From 3.0.0 we are including a beta test conversion of PHYLIP
3.61 (PHYLIPNEW). Program names now begin with 'f' rather than 'e'
and interfaces are more EMBOSS-like. Please pass on feedback to our bug
reporting list emboss-bug@emboss.open-bio.org
PHYLIPNEW is available as a Beta release 3.6b from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file PHYLIP-3.6b.tar.gz TOPO
(Transmembrane display) Application details and documentation for TOPO
TOPO is available as release 1.0.0 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file TOPO-1.0.0.tar.gz Vienna
RNA package Application details and documentation for VIENNA
Vienna is available as release 1.6 from our FTP server
ftp://emboss.open-bio.org/pub/EMBOSS/ in file VIENNA-1.6.tar.gz
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