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2022-03-08academic/gretl: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/ggobi: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/gerbv: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/geomview: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/gelemental: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/geda-gaf: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/gchemutils: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/fityk: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/extrema: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/clustalo: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/boinc: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/antiprism: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/ViennaRNA: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/EMBOSS: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/EMBASSY: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-08academic/glpk: Remove .la files.B. Watson
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-07academic/gcompris-qt: Updated for version 2.3.Willy Sudiarto Raharjo
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-07academic/Mnemosyne: Removed (requires nonexistent PyQtWebEngine dep).B. Watson
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-06academic/glpk: Don't ship *.la files.Erich Ritz
Signed-off-by: Erich Ritz <erich.public@protonmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-05academic/pysam: Use internal htslib-1.14brobr
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-05academic/samtools: Update to version 1.15brobr
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-05academic/bcftools: Update to version 1.15brobr
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-05academic/cistrome-MACS: Handle content-disposition download.Matteo Bernardini
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org> Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
2022-03-05academic/FCSalyzer: Handle url-encoded filenames.Matteo Bernardini
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org> Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
2022-03-04academic/tuxmath: Rename blits. Remove dupe lan player.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-04academic/avogadro: Removed.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-04academic/QtiPlot: Removed.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-04academic/verilator: Updated for version 4.218.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-04academic/tuxmath: Use -std=gnu11 and -fcommon.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-04academic/pyCRAC: Update MD5SUM.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-04academic/edsim51di: Update DOWNLOAD to https.Dave Woodfall
NOTE: the md5sum has changed. Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-03academic/ugene: Use -std=c++11.Dave Woodfall
I also reversed some of the -Werror flags to get this to build. Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-03academic/xflr5: Update DOWNLOAD.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-03academic/verilog: Updated for version 11.0.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-03academic/tophat: Use -std=c++14.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-03academic/bowtie2-legacy: Patch source.Dave Woodfall
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
2022-03-03various: Use zulu jdk builds for REQUIRES.Andrew Clemons
As noted in the FAQ, you can still use Oracle's JDK for building or running, but we'll default to the Zulu builds in the REQUIRES since they are easily downloadable. Zulu is a good default for us at SBo since it is available for both 32 and 64 bit, freely downloadable and compatible and they provide builds for all the LTS branches. We don't currently have builds for Adoptium (previously AdoptOpenJDK, not part of the Eclipse Foundation), but if someone wants to submit builds for them, we can include them too. Note though that they do not provide 32 bit builds. Software should run with either Zulu or Oracle's JDK, or indeed any other builds of OpenJDK, so if I have broken your build with this change, apologies. This should be rare and we can change the REQUIRES back to jdkX in that case and note it in the README, but I do not expect this should be the case. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/archaeopteryx: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/jalview: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/sequence-analysis: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/snpEff: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/trimmomatic: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/wehi-cellsymphony: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/wehi-deid: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/wehi-hackit: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/wehi-weasel: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/aliview: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/TreeGraph: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/FCSalyzer: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-03-03academic/EMBOSS: Use zulu-openjdk11.Andrew Clemons
Before the adoptopenjdk packages was switched to JDK12, it was JDK11. Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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