diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/diamond/README | 12 | ||||
| -rw-r--r-- | academic/diamond/diamond.SlackBuild | 4 | ||||
| -rw-r--r-- | academic/diamond/diamond.info | 10 |
3 files changed, 13 insertions, 13 deletions
diff --git a/academic/diamond/README b/academic/diamond/README index a5c66d098892..07af60110e71 100644 --- a/academic/diamond/README +++ b/academic/diamond/README @@ -11,22 +11,22 @@ features are: as well as taxonomic classification. To now run an alignment task, we assume to have a protein database file -in FASTA format named `nr.faa` and a file of DNA reads that we want to -align named `reads.fna`. +in FASTA format named 'nr.faa' and a file of DNA reads that we want to +align named 'reads.fna'. -In order to set up a reference database for DIAMOND, the `makedb` +In order to set up a reference database for DIAMOND, the 'makedb' command needs to be executed with the following command line: $ diamond makedb --in nr.faa -d nr This will create a binary DIAMOND database file with the specified name -(`nr.dmnd`). The alignment task may then be initiated using the `blastx` +('nr.dmnd'). The alignment task may then be initiated using the 'blastx' command like this: $ diamond blastx -d nr -q reads.fna -o matches.m8 -The output file here is specified with the `–o` option and named -`matches.m8`. By default, it is generated in BLAST tabular format. +The output file here is specified with the '-o' option and named +'matches.m8'. By default, it is generated in BLAST tabular format. Publication: Buchfink B, Xie C, Huson DH, "Fast and sensitive protein alignment using diff --git a/academic/diamond/diamond.SlackBuild b/academic/diamond/diamond.SlackBuild index 28d34e3a8865..06d783043fff 100644 --- a/academic/diamond/diamond.SlackBuild +++ b/academic/diamond/diamond.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for diamond -# Copyright 2018-2019 Petar Petrov slackalaxy@gmail.com +# Copyright 2018-2020 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=diamond -VERSION=${VERSION:-0.9.25} +VERSION=${VERSION:-0.9.29} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/diamond/diamond.info b/academic/diamond/diamond.info index ecd606884a32..e94f42b60b1a 100644 --- a/academic/diamond/diamond.info +++ b/academic/diamond/diamond.info @@ -1,10 +1,10 @@ PRGNAM="diamond" -VERSION="0.9.25" +VERSION="0.9.29" HOMEPAGE="https://github.com/bbuchfink/diamond" -DOWNLOAD="https://github.com/bbuchfink/diamond/archive/v0.9.25/diamond-0.9.25.tar.gz" -MD5SUM="3e8e11e63e174b34f330bc72db9421dd" -DOWNLOAD_x86_64="" -MD5SUM_x86_64="" +DOWNLOAD="UNSUPPORTED" +MD5SUM="" +DOWNLOAD_x86_64="https://github.com/bbuchfink/diamond/archive/v0.9.29/diamond-0.9.29.tar.gz" +MD5SUM_x86_64="c9a1cb0f2128e621695f7ee0a05c2af8" REQUIRES="" MAINTAINER="Petar Petrov" EMAIL="slackalaxy@gmail.com" |