diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/colamd/README | 6 | ||||
| -rw-r--r-- | academic/colamd/autotoolize.diff | 139 | ||||
| -rw-r--r-- | academic/colamd/colamd.SlackBuild | 107 | ||||
| -rw-r--r-- | academic/colamd/colamd.info | 10 | ||||
| -rw-r--r-- | academic/colamd/slack-desc | 19 |
5 files changed, 281 insertions, 0 deletions
diff --git a/academic/colamd/README b/academic/colamd/README new file mode 100644 index 0000000000000..caa522b0e73f6 --- /dev/null +++ b/academic/colamd/README @@ -0,0 +1,6 @@ +The COLAMD column approximate minimum degree ordering algorithm computes +a permutation vector P such that the LU factorization of A (:,P) +tends to be sparser than that of A. The Cholesky factorization of +(A (:,P))'*(A (:,P)) will also tend to be sparser than that of A'*A. + +This package is part of SuiteSparse. diff --git a/academic/colamd/autotoolize.diff b/academic/colamd/autotoolize.diff new file mode 100644 index 0000000000000..632e5a2c10f77 --- /dev/null +++ b/academic/colamd/autotoolize.diff @@ -0,0 +1,139 @@ +diff --git a/Demo/Makefile.am b/Demo/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Demo/Makefile.am +@@ -0,0 +1,30 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) ++LDADD = $(top_builddir)/Source/libcolamd.la ++ ++EXTRA_DIST = \ ++ colamd_example.out \ ++ colamd_l_example.out ++ ++# Disable the .out implicit pattern rule. Prevents GNU make from ++# adding bogus dependencies for the .out files listed above. ++%.out: % ++ ++check_PROGRAMS = \ ++ colamd_example \ ++ colamd_l_example ++ ++colamd_example_SOURCES = colamd_example.c ++colamd_l_example_SOURCES = colamd_l_example.c ++ ++check-local: $(check_PROGRAMS) $(check_PROGRAMS:=.out) ++ @for i in $(check_PROGRAMS); do \ ++ echo "Testing $$i"; \ ++ ./$$i$(EXEEXT) > my_$$i.out; \ ++ if diff -u $(srcdir)/$$i.out my_$$i.out; then \ ++ echo "Test $$i PASSED."; \ ++ else \ ++ echo "Test $$i FAILED."; \ ++ fi; \ ++ done ++ ++CLEANFILES = my_*.out +diff --git a/Include/Makefile.am b/Include/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Include/Makefile.am +@@ -0,0 +1 @@ ++pkginclude_HEADERS = colamd.h +diff --git a/Makefile.am b/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Makefile.am +@@ -0,0 +1,5 @@ ++SUBDIRS = Include Source Demo ++EXTRA_DIST = README.txt Doc/ChangeLog Doc/lesser.txt ++ ++pkgconfigdir = $(libdir)/pkgconfig ++pkgconfig_DATA = colamd.pc +diff --git a/Source/Makefile.am b/Source/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Source/Makefile.am +@@ -0,0 +1,18 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) ++ ++COLAMDSRC = \ ++ colamd.c ++ ++lib_LTLIBRARIES = libcolamd.la ++noinst_LTLIBRARIES = libcolamdi.la libcolamdl.la ++ ++libcolamdi_la_SOURCES = $(COLAMDSRC) ++libcolamdi_la_LIBADD = -lm ++ ++libcolamdl_la_SOURCES = $(COLAMDSRC) ++libcolamdl_la_LIBADD = -lm ++libcolamdl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG ++ ++libcolamd_la_SOURCES = colamd_global.c ++libcolamd_la_LIBADD = libcolamdi.la libcolamdl.la ++libcolamd_la_LDFLAGS = -no-undefined -version-number 2:8:0 +diff --git a/colamd.pc.in b/colamd.pc.in +new file mode 100644 +--- /dev/null ++++ b/colamd.pc.in +@@ -0,0 +1,13 @@ ++prefix=@prefix@ ++exec_prefix=@exec_prefix@ ++libdir=@libdir@ ++includedir=@includedir@ ++ ++Name: @PACKAGE_NAME@ ++Description: Column approximate minimum degree ordering ++Version: @PACKAGE_VERSION@ ++URL: @PACKAGE_URL@ ++Requires.private: suitesparseconfig ++Libs: -L${libdir} -lcolamd ++Libs.private: -lm ++Cflags: -I${includedir}/colamd +diff --git a/configure.ac b/configure.ac +new file mode 100644 +--- /dev/null ++++ b/configure.ac +@@ -0,0 +1,42 @@ ++# -*- Autoconf -*- ++# Process this file with autoconf to produce a configure script. ++ ++AC_PREREQ([2.69]) ++AC_INIT([COLAMD],[2.8.0],[DrTimothyAldenDavis@gmail.com],[colamd],[http://www.suitesparse.com/]) ++AC_CONFIG_SRCDIR([Source/colamd_global.c]) ++AC_CONFIG_HEADERS([config.h]) ++AM_INIT_AUTOMAKE([foreign]) ++LT_INIT ++ ++# Checks for programs. ++AC_PROG_INSTALL ++AC_PROG_CC ++ ++LIBS_SAVED=$LIBS ++ ++# Checks for libraries. ++AC_CHECK_LIB([m], [sqrt]) ++ ++PKG_PROG_PKG_CONFIG ++PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig], ++ [], ++ [AC_MSG_ERROR([cannot find suitesparseconfig])]) ++ ++# Checks for header files. ++AC_CHECK_HEADERS([limits.h stdlib.h]) ++ ++# Checks for typedefs, structures, and compiler characteristics. ++AC_TYPE_SIZE_T ++ ++# Checks for library functions. ++AC_CHECK_FUNCS([sqrt]) ++ ++LIBS=$LIBS_SAVED ++ ++AC_CONFIG_FILES([ ++ colamd.pc ++ Makefile ++ Demo/Makefile ++ Include/Makefile ++ Source/Makefile]) ++AC_OUTPUT diff --git a/academic/colamd/colamd.SlackBuild b/academic/colamd/colamd.SlackBuild new file mode 100644 index 0000000000000..be5ee26e39708 --- /dev/null +++ b/academic/colamd/colamd.SlackBuild @@ -0,0 +1,107 @@ +#!/bin/sh + +# Slackware build script for COLAMD + +# Copyright 2013 Kyle Guinn <elyk03@gmail.com>, USA +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=colamd +SRCNAM=COLAMD +VERSION=${VERSION:-2.8.0} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +if [ -z "$ARCH" ]; then + case "$(uname -m)" in + i?86) ARCH=i486 ;; + arm*) ARCH=arm ;; + *) ARCH=$(uname -m) ;; + esac +fi + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +DOCS="README.txt Doc/ChangeLog Doc/lesser.txt" + +if [ "$ARCH" = "i486" ]; then + SLKCFLAGS="-O2 -march=i486 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +# Recommended by SuiteSparse +SLKCFLAGS="$SLKCFLAGS -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $SRCNAM +tar xvf $CWD/$SRCNAM-$VERSION.tar.gz +cd $SRCNAM +chown -R root:root . +find -L . \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +patch -p1 < $CWD/autotoolize.diff +autoreconf -vif + +CFLAGS="$SLKCFLAGS" \ +./configure \ + --prefix=/usr \ + --libdir=/usr/lib${LIBDIRSUFFIX} \ + --sysconfdir=/etc \ + --localstatedir=/var \ + --mandir=/usr/man \ + --infodir=/usr/info \ + --docdir=/usr/doc/$PRGNAM-$VERSION \ + --enable-shared \ + --disable-static \ + --disable-dependency-tracking \ + --build=$ARCH-slackware-linux + +make +make check +make install-strip DESTDIR=$PKG + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a $DOCS $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/colamd/colamd.info b/academic/colamd/colamd.info new file mode 100644 index 0000000000000..7b75dded2bac5 --- /dev/null +++ b/academic/colamd/colamd.info @@ -0,0 +1,10 @@ +PRGNAM="colamd" +VERSION="2.8.0" +HOMEPAGE="https://www.cise.ufl.edu/research/sparse/colamd/" +DOWNLOAD="https://www.cise.ufl.edu/research/sparse/colamd/COLAMD-2.8.0.tar.gz" +MD5SUM="482dc4f958c2dafdd430d4c3148d15c5" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="suitesparseconfig" +MAINTAINER="Kyle Guinn" +EMAIL="elyk03@gmail.com" diff --git a/academic/colamd/slack-desc b/academic/colamd/slack-desc new file mode 100644 index 0000000000000..17976c31635dc --- /dev/null +++ b/academic/colamd/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +colamd: COLAMD (sparse matrix ordering routines) +colamd: +colamd: The COLAMD column approximate minimum degree ordering algorithm +colamd: computes a permutation vector P such that the LU factorization of +colamd: A (:,P) tends to be sparser than that of A. The Cholesky +colamd: factorization of (A (:,P))'*(A (:,P)) will also tend to be sparser +colamd: than that of A'*A. +colamd: +colamd: +colamd: +colamd: |