diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/copasi/README | 18 | ||||
| -rw-r--r-- | academic/copasi/copasi.SlackBuild | 15 | ||||
| -rw-r--r-- | academic/copasi/copasi.info | 10 |
3 files changed, 22 insertions, 21 deletions
diff --git a/academic/copasi/README b/academic/copasi/README index d8e33bc6bcf36..9039958d6de7d 100644 --- a/academic/copasi/README +++ b/academic/copasi/README @@ -1,16 +1,16 @@ COPASI is a package for modeling and simulation of biochemical networks, popular in the field of systems biology. -COPASI is a stand-alone program that simulates models of biochemical -networks using ODE solvers or Gillespie's stochastic simulation -algorithm. COPASI is compatible with models in SBML format. It also -performs several analyses, such as steady state, stability, parameter -sensitivity, elementary modes, Lyapunov exponents, optimization, and -parameter estimation. Data can be visualized in plots, histograms and -animations of network diagrams. COPASI's GUI is based on QT, but a -command line version is also included that allows for processing +COPASI is a stand-alone program that simulates models of biochemical +networks using ODE solvers or Gillespie's stochastic simulation +algorithm. COPASI is compatible with models in SBML format. It also +performs several analyses, such as steady state, stability, parameter +sensitivity, elementary modes, Lyapunov exponents, optimization, and +parameter estimation. Data can be visualized in plots, histograms and +animations of network diagrams. COPASI's GUI is based on QT, but a +command line version is also included that allows for processing computations in batch mode. COPASI is a collaboration between research groups at the Biocomplexity Institute at Virginia Tech, University of Heidelberg, University of -Connecticut, University of Manchester, and previously the EML-Research. +Connecticut, University of Manchester and previously the EML-Research. diff --git a/academic/copasi/copasi.SlackBuild b/academic/copasi/copasi.SlackBuild index 58752ab156ef9..d1ccc96a61753 100644 --- a/academic/copasi/copasi.SlackBuild +++ b/academic/copasi/copasi.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=copasi -VERSION=${VERSION:-4.17.135} +VERSION=${VERSION:-4.18.136} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -43,7 +43,7 @@ if [ "$ARCH" = "i586" ]; then elif [ "$ARCH" = "x86_64" ]; then BINNAME="Linux-64bit" else - echo "$ARCH is not supported by the $PRGNAM build script." + echo "$ARCH is not supported by the $PRGNAM build script..." exit 1 fi @@ -55,15 +55,16 @@ set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf COPASI-$VERSION-$BINNAME +rm -rf COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION tar xvf $CWD/COPASI-$VERSION-$BINNAME.tar.gz -cd COPASI-$VERSION-$BINNAME +mv COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION +cd $PRGNAM-$VERSION chown -R root:root . find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ - -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \ + -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; mkdir -p $PKG/usr/bin $PKG/usr/share/{copasi,pixmaps,applications} cp -a bin/* $PKG/usr/bin/ diff --git a/academic/copasi/copasi.info b/academic/copasi/copasi.info index a16000eb047a5..72bf70f11b6f3 100644 --- a/academic/copasi/copasi.info +++ b/academic/copasi/copasi.info @@ -1,10 +1,10 @@ PRGNAM="copasi" -VERSION="4.17.135" +VERSION="4.18.136" HOMEPAGE="http://www.copasi.org" -DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-32bit.tar.gz" -MD5SUM="d3d03eb1e4b24613d930b9b2adec5ee7" -DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-64bit.tar.gz" -MD5SUM_x86_64="af6285199dcf877ad3450333c2b93201" +DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-32bit.tar.gz" +MD5SUM="95e2fe76b8af522de162aff2f227ea78" +DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-64bit.tar.gz" +MD5SUM_x86_64="ab43c0852be21f335ec77d71122a08f4" REQUIRES="" MAINTAINER="Pedro Mendes" EMAIL="pedro@gepasi.org" |