diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/spidey/README | 9 | ||||
| -rw-r--r-- | academic/spidey/slack-desc | 19 | ||||
| -rw-r--r-- | academic/spidey/spidey.SlackBuild | 45 | ||||
| -rw-r--r-- | academic/spidey/spidey.info | 10 |
4 files changed, 83 insertions, 0 deletions
diff --git a/academic/spidey/README b/academic/spidey/README new file mode 100644 index 000000000000..0912181c252b --- /dev/null +++ b/academic/spidey/README @@ -0,0 +1,9 @@ +Spidey is an mRNA-to-genomic alignment program. For a complete +description of how Spidey works, visit +http://www.ncbi.nlm.nih.gov/spidey/spideydoc.html. + +This is just repackaging of the ready binary for x86 and will not run +on x86_64. It will probably work just fine on a Slackware multilib +box, but we do not support that ;). If you want to build spidey from +source, you should download and compile the NCBI toolkit. For more +information: http://www.ncbi.nlm.nih.gov/spidey/spideysource.html diff --git a/academic/spidey/slack-desc b/academic/spidey/slack-desc new file mode 100644 index 000000000000..fb74b8cb230a --- /dev/null +++ b/academic/spidey/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. Line +# up the first '|' above the ':' following the base package name, and the '|' +# on the right side marks the last column you can put a character in. You must +# make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':'. + + |-----handy-ruler------------------------------------------------------| +spidey: spidey (mRNA-to-genomic alignment) +spidey: +spidey: Spidey is an mRNA-to-genomic alignment program. +spidey: +spidey: +spidey: +spidey: +spidey: +spidey: +spidey: +spidey: Home: http://www.ncbi.nlm.nih.gov/spidey/index.html
\ No newline at end of file diff --git a/academic/spidey/spidey.SlackBuild b/academic/spidey/spidey.SlackBuild new file mode 100644 index 000000000000..afe96d9c20b5 --- /dev/null +++ b/academic/spidey/spidey.SlackBuild @@ -0,0 +1,45 @@ +#!/bin/sh + +# Slackware build script for spidey +# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and +# hereby submitted to the public domain + +# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING +# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ +# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. + +PRGNAM=spidey +VERSION=${VERSION:-20060601} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +ARCH=i386 + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +mkdir $PRGNAM-$VERSION +cd $PRGNAM-$VERSION +gunzip -c $CWD/$PRGNAM.linux.gz > spidey + +install -D -m755 spidey $PKG/usr/bin/spidey + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/spidey/spidey.info b/academic/spidey/spidey.info new file mode 100644 index 000000000000..cd921824cdf8 --- /dev/null +++ b/academic/spidey/spidey.info @@ -0,0 +1,10 @@ +PRGNAM="spidey" +VERSION="20060601" +HOMEPAGE="http://www.ncbi.nlm.nih.gov/spidey/index.html" +DOWNLOAD="ftp://ftp.ncbi.nih.gov/pub/wheelan/Spidey/spidey.linux.gz" +MD5SUM="2e56ef2e4fcf57eca266fb1b3bb56c7e" +DOWNLOAD_x86_64="UNSUPPORTED" +MD5SUM_x86_64="UNSUPPORTED" +MAINTAINER="Petar Petrov" +EMAIL="ppetrov@paju.oulu.fi" +APPROVED="Niels Horn" |