diff options
Diffstat (limited to 'academic')
-rw-r--r-- | academic/avogadro/README | 5 | ||||
-rw-r--r-- | academic/avogadro/avogadro.1 | 29 | ||||
-rw-r--r-- | academic/avogadro/avogadro.SlackBuild | 85 | ||||
-rw-r--r-- | academic/avogadro/avogadro.info | 10 | ||||
-rw-r--r-- | academic/avogadro/doinst.sh | 4 | ||||
-rw-r--r-- | academic/avogadro/slack-desc | 19 |
6 files changed, 0 insertions, 152 deletions
diff --git a/academic/avogadro/README b/academic/avogadro/README deleted file mode 100644 index cc86a06205b19..0000000000000 --- a/academic/avogadro/README +++ /dev/null @@ -1,5 +0,0 @@ -Avogadro is a molecular graphics and modelling system targeted at molecules -and biomolecules. It can visualize properties like molecular orbitals or -electrostatic potentials and features an intuitive molecular builder. - -This requires openbabel and numpy. diff --git a/academic/avogadro/avogadro.1 b/academic/avogadro/avogadro.1 deleted file mode 100644 index 1d0be42620e9c..0000000000000 --- a/academic/avogadro/avogadro.1 +++ /dev/null @@ -1,29 +0,0 @@ -.TH "AVOGADRO" "1" "22 January 2009" "" "User commands" - -.SH NAME -avogadro \- Molecular Graphics and Modelling System - -.SH SYNOPSIS -\fBavogadro\fR [\fBoptions\fR] [\fIfiles\fR] - -.SH DESCRIPTION -.PP -\fBavogadro\fR is a molecular graphics and modelling system targeted at molecules -and biomolecules. It can visualize properties like molecular orbitals or -electrostatic potentials and features an intuitive molecular builder. - -.SH OPTIONS -.PP -Listed below are the command line options for \fBavogadro\fR: -.TP -.B \-\-help, \-h -Show help options. -.TP -.B \-\-version, \-v -Show version information. - -.SH AUTHOR -.PP -This manual page was written by Jordan Mantha <\&laserjock@ubuntu.com\&>. -.PP -Released under the GNU General Public License, version 2 or later. diff --git a/academic/avogadro/avogadro.SlackBuild b/academic/avogadro/avogadro.SlackBuild deleted file mode 100644 index ed2d07cddc54f..0000000000000 --- a/academic/avogadro/avogadro.SlackBuild +++ /dev/null @@ -1,85 +0,0 @@ -#!/bin/sh - -# Slackware build script for Avogadro - -# Written by Larry Hajali <larryhaja[at]gmail[dot]com> - -PRGNAM=avogadro -VERSION=${VERSION:-0.9.7} -ARCH=${ARCH:-i486} -BUILD=${BUILD:-1} -TAG=${TAG:-_SBo} - -CWD=$(pwd) -TMP=${TMP:-/tmp/SBo} -PKG=$TMP/package-$PRGNAM -OUTPUT=${OUTPUT:-/tmp} - -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "i686" ]; then - SLKCFLAGS="-O2 -march=i686 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "x86_64" ]; then - SLKCFLAGS="-O2 -fPIC" - LIBDIRSUFFIX="64" -fi - -set -e - -rm -rf $PKG -mkdir -p $TMP $PKG $OUTPUT -cd $TMP -rm -rf $PRGNAM-$VERSION -tar xvf $CWD/$PRGNAM-$VERSION.tar.bz2 -cd $PRGNAM-$VERSION -chown -R root:root . -find . \ - \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \ - -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ - -exec chmod 644 {} \; - -# Fix icon name in desktop menu item. -sed -i '/^Icon/s|=.*|=avogadro-icon.png|' avogadro/src/avogadro.desktop - -mkdir build && cd build - cmake \ - -DCMAKE_INSTALL_PREFIX=/usr \ - -DCMAKE_C_FLAGS:STRING="$SLKCFLAGS" \ - -DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS" \ - -DLIB_SUFFIX=${LIBDIRSUFFIX} \ - -DENABLE_RPATH=OFF \ - -DCMAKE_SKIP_RPATH=YES \ - -DENABLE_GLSL=ON \ - -DENABLE_UPDATE_CHECKER=OFF \ - -DCMAKE_BUILD_TYPE=Release .. - - make VERBOSE=1 - make install DESTDIR=$PKG -cd - - -# Remove file to prevent avogadro from segfaulting. -#rm -f $PKG/usr/share/libavogadro/extensionScripts/example.py - -find $PKG | xargs file | grep -e "executable" -e "shared object" | grep ELF \ - | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true - -mkdir -p $PKG/usr/man/man1 -install -m 0644 $CWD/$PRGNAM.1 $PKG/usr/man/man1/ -gzip -9 $PKG/usr/man/man?/*.? - -mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - AUTHORS ChangeLog COPYING INSTALL cmake/modules/COPYING-CMAKE-SCRIPTS \ - avogadro/gl2ps/{COPYING*,TODO} \ - $PKG/usr/doc/$PRGNAM-$VERSION -cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild - -mkdir -p $PKG/install -cat $CWD/slack-desc > $PKG/install/slack-desc -cat $CWD/doinst.sh > $PKG/install/doinst.sh - -cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/avogadro/avogadro.info b/academic/avogadro/avogadro.info deleted file mode 100644 index f37956de143bf..0000000000000 --- a/academic/avogadro/avogadro.info +++ /dev/null @@ -1,10 +0,0 @@ -PRGNAM="avogadro" -VERSION="0.9.7" -HOMEPAGE="http://avogadro.openmolecules.net/wiki/Main_Page" -DOWNLOAD="http://downloads.sourceforge.net/avogadro/avogadro-0.9.7.tar.bz2" -MD5SUM="13234be4e2caa6017721b937a276cdd9" -DOWNLOAD_x86_64="" -MD5SUM_x86_64="" -MAINTAINER="Larry Hajali" -EMAIL="larryhaja[at]gmail[dot]com" -APPROVED="rworkman" diff --git a/academic/avogadro/doinst.sh b/academic/avogadro/doinst.sh deleted file mode 100644 index 4e8ba7071dea7..0000000000000 --- a/academic/avogadro/doinst.sh +++ /dev/null @@ -1,4 +0,0 @@ -if [ -x /usr/bin/update-desktop-database ]; then - /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 -fi - diff --git a/academic/avogadro/slack-desc b/academic/avogadro/slack-desc deleted file mode 100644 index bda77bc1762fd..0000000000000 --- a/academic/avogadro/slack-desc +++ /dev/null @@ -1,19 +0,0 @@ -# HOW TO EDIT THIS FILE: -# The "handy ruler" below makes it easier to edit a package description. Line -# up the first '|' above the ':' following the base package name, and the '|' on -# the right side marks the last column you can put a character in. You must make -# exactly 11 lines for the formatting to be correct. It's also customary to -# leave one space after the ':'. - - |-----handy-ruler------------------------------------------------------| -avogadro: Avogadro (An advanced molecular editor based on Qt 4.) -avogadro: -avogadro: Avogadro is a molecular graphics and modelling system targetted at -avogadro: molecules and biomolecules. It can visualize properties like -avogadro: molecular orbitals or electrostatic potentials and features an -avogadro: intuitive molecular builder. -avogadro: -avogadro: Homepage: http://avogadro.openmolecules.net/wiki/Main_Page -avogadro: -avogadro: -avogadro: |