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Diffstat (limited to 'academic/ugene/README')
| -rw-r--r-- | academic/ugene/README | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/academic/ugene/README b/academic/ugene/README index 6ef0504bd45cb..181b31865121f 100644 --- a/academic/ugene/README +++ b/academic/ugene/README @@ -43,8 +43,10 @@ program. All of them are available at SlackBuilds.org: - cufflinks (A reference-guided assembler for RNA-Seq experiments) - cutadapt (Trim adapters from high-throughput sequencing reads) - fastqc (A quality control tool for high throughput sequence data) +- FastTree (Infers approximately-ML phylogenetic trees) - HMMER (Biosequence analysis using profile hidden Markov models) - iqtree (Efficient and versatile phylogenomic software by ML) +- kalign (A fast multiple sequence alignment program) - MetaPhlAn2 (Metagenomic Phylogenetic Analysis) - mafft (A multiple sequence alignment program) - mrbayes (MrBayes: Bayesian Inference of Phylogeny) @@ -54,6 +56,7 @@ program. All of them are available at SlackBuilds.org: - snpEff (Genetic variant annotation and effect prediction toolbox) - spades (SPAdes Genome Assembler) - spidey (mRNA-to-genomic alignment) +- stringtie (Assembler of RNA-Seq alignments) - t_coffee (A multiple sequence alignment program) - tabix-legacy (Generic indexer for TAB-delimited genome position files) - tophat (Splice junction mapper for RNA-Seq reads) |