diff options
Diffstat (limited to 'academic/t_coffee')
| -rw-r--r-- | academic/t_coffee/slack-desc | 4 | ||||
| -rw-r--r-- | academic/t_coffee/t_coffee.SlackBuild | 21 | ||||
| -rw-r--r-- | academic/t_coffee/t_coffee.info | 6 |
3 files changed, 13 insertions, 18 deletions
diff --git a/academic/t_coffee/slack-desc b/academic/t_coffee/slack-desc index 89fef07053d10..5fca2e78ef185 100644 --- a/academic/t_coffee/slack-desc +++ b/academic/t_coffee/slack-desc @@ -13,7 +13,7 @@ t_coffee: T-Coffee to align sequences or to combine the output of your t_coffee: favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) t_coffee: into one unique alignment (M-Coffee). t_coffee: -t_coffee: Home: http://www.tcoffee.org/ -t_coffee: References: /usr/doc/t_coffee-11.00.8cbe486/References +t_coffee: Homepage: http://www.tcoffee.org/ +t_coffee: t_coffee: t_coffee: diff --git a/academic/t_coffee/t_coffee.SlackBuild b/academic/t_coffee/t_coffee.SlackBuild index d99c398ae452b..e54497f7a943d 100644 --- a/academic/t_coffee/t_coffee.SlackBuild +++ b/academic/t_coffee/t_coffee.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for t_coffee -# Copyright 2013-2019 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,12 +23,13 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=t_coffee -TARNAM=tcoffee -VERSION=${VERSION:-13.00_git33cdeb8} -COMMIT=33cdeb86ffb77fe142ccf7a3ee568340b7583f7f +VERSION=${VERSION:-13.41.0_git28bdc39} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} +TARNAM=tcoffee +COMMIT=28bdc39911d10d8597db8513f9515fb2ed7a9158 + if [ -z "$ARCH" ]; then case "$( uname -m )" in i?86) ARCH=i586 ;; @@ -71,17 +72,11 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -cd compile - # Use our CFLAGS -sed -i "/^CFLAGS/s/=/+=/" makefile - -CFLAGS="$SLKCFLAGS" \ -make all - -install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM +sed -i "/^CFLAGS/s/=/+=/" t_coffee/src/makefile -cd - +CFLAGS="$SLKCFLAGS" make t_coffee -C t_coffee/src +install -D -m755 t_coffee/src/$PRGNAM $PKG/usr/bin/$PRGNAM find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true diff --git a/academic/t_coffee/t_coffee.info b/academic/t_coffee/t_coffee.info index 70063ae3061e6..ec75e49f23e9f 100644 --- a/academic/t_coffee/t_coffee.info +++ b/academic/t_coffee/t_coffee.info @@ -1,8 +1,8 @@ PRGNAM="t_coffee" -VERSION="13.00_git33cdeb8" +VERSION="13.41.0_git28bdc39" HOMEPAGE="http://www.tcoffee.org/" -DOWNLOAD="https://github.com/cbcrg/tcoffee/archive/33cdeb8/tcoffee-33cdeb86ffb77fe142ccf7a3ee568340b7583f7f.tar.gz" -MD5SUM="7818cfe47cbe6dc7c0ab669b72c5d8db" +DOWNLOAD="https://github.com/cbcrg/tcoffee/archive/28bdc39/tcoffee-28bdc39911d10d8597db8513f9515fb2ed7a9158.tar.gz" +MD5SUM="3392d55a2817575ce90c1c3e94e08c0b" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" |