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Diffstat (limited to 'academic/spqr/patches/autoconfiscate.diff')
| -rw-r--r-- | academic/spqr/patches/autoconfiscate.diff | 1127 |
1 files changed, 1127 insertions, 0 deletions
diff --git a/academic/spqr/patches/autoconfiscate.diff b/academic/spqr/patches/autoconfiscate.diff new file mode 100644 index 0000000000000..fbf3dce1db02b --- /dev/null +++ b/academic/spqr/patches/autoconfiscate.diff @@ -0,0 +1,1127 @@ +diff --git a/Demo/Makefile.am b/Demo/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Demo/Makefile.am +@@ -0,0 +1,115 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) ++ ++EXTRA_DIST = \ ++ README.txt \ ++ qrdemo_out.txt \ ++ qrdemoc_out.txt ++ ++check_PROGRAMS = \ ++ qrsimple \ ++ qrsimplec \ ++ qrdemo \ ++ qrdemoc ++ ++qrsimple_SOURCES = qrsimple.cpp ++qrsimple_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) ++ ++qrsimplec_SOURCES = qrsimplec.c ++qrsimplec_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) ++ ++qrdemo_SOURCES = qrdemo.cpp ++qrdemo_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) ++ ++qrdemoc_SOURCES = qrdemoc.c ++qrdemoc_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) ++ ++MATRICES = \ ++ $(top_srcdir)/Matrix/GD01_b.mtx \ ++ $(top_srcdir)/Matrix/GD06_theory.mtx \ ++ $(top_srcdir)/Matrix/GD98_a.mtx \ ++ $(top_srcdir)/Matrix/LFAT5.mtx \ ++ $(top_srcdir)/Matrix/Ragusa16.mtx \ ++ $(top_srcdir)/Matrix/Tina_AskCal.mtx \ ++ $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \ ++ $(top_srcdir)/Matrix/a0.mtx \ ++ $(top_srcdir)/Matrix/a04.mtx \ ++ $(top_srcdir)/Matrix/a1.mtx \ ++ $(top_srcdir)/Matrix/a2.mtx \ ++ $(top_srcdir)/Matrix/a4.mtx \ ++ $(top_srcdir)/Matrix/ash219.mtx \ ++ $(top_srcdir)/Matrix/b1_ss.mtx \ ++ $(top_srcdir)/Matrix/bcspwr01.mtx \ ++ $(top_srcdir)/Matrix/bfwa62.mtx \ ++ $(top_srcdir)/Matrix/c2.mtx \ ++ $(top_srcdir)/Matrix/c32.mtx \ ++ $(top_srcdir)/Matrix/lfat5b.mtx \ ++ $(top_srcdir)/Matrix/lp_share1b.mtx \ ++ $(top_srcdir)/Matrix/lpi_galenet.mtx \ ++ $(top_srcdir)/Matrix/lpi_itest6.mtx \ ++ $(top_srcdir)/Matrix/r2.mtx \ ++ $(top_srcdir)/Matrix/s32.mtx \ ++ $(top_srcdir)/Matrix/west0067.mtx \ ++ $(top_srcdir)/Matrix/young1c.mtx \ ++ $(top_srcdir)/Matrix/lp_e226_transposed.mtx ++ ++check-local: $(check_PROGRAMS) $(MATRICES) ++ -./qrsimple < $(top_srcdir)/Matrix/ash219.mtx ++ -./qrsimplec < $(top_srcdir)/Matrix/ash219.mtx ++ -./qrsimple < $(top_srcdir)/Matrix/west0067.mtx ++ -./qrsimplec < $(top_srcdir)/Matrix/west0067.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/a2.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/r2.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/a04.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/a2.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/west0067.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/c2.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/a0.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/lfat5b.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/bfwa62.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/LFAT5.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/b1_ss.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/bcspwr01.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/lpi_galenet.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/lpi_itest6.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/ash219.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/a4.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/s32.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/c32.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/lp_share1b.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/a1.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/GD06_theory.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/GD01_b.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/GD98_a.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/Ragusa16.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/young1c.mtx ++ -./qrdemo < $(top_srcdir)/Matrix/lp_e226_transposed.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/r2.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/a04.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/west0067.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/c2.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/a0.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/lfat5b.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/bfwa62.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/LFAT5.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/b1_ss.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/bcspwr01.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/lpi_galenet.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/lpi_itest6.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/ash219.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/a4.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/s32.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/c32.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/lp_share1b.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/a1.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/GD06_theory.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/GD01_b.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/GD98_a.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/Ragusa16.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/young1c.mtx ++ -./qrdemoc < $(top_srcdir)/Matrix/lp_e226_transposed.mtx +diff --git a/Doc/Makefile.am b/Doc/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Doc/Makefile.am +@@ -0,0 +1,29 @@ ++EXTRA_DIST = \ ++ ChangeLog \ ++ License.txt \ ++ README.txt \ ++ gpl.txt ++ ++dist_noinst_DATA = \ ++ spqr_user_guide.tex \ ++ spqr_user_guide.bib ++ ++dist_pdf_DATA = \ ++ spqr_user_guide.pdf \ ++ algo_spqr.pdf \ ++ spqr.pdf ++ ++TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error ++BIB = BIBINPUTS="$(srcdir):" bibtex ++%.pdf: %.tex %.bbl ++ $(TEX) $* ++ while grep -q "Rerun to get cross-references right" $*.log; do \ ++ $(TEX) $*; \ ++ done ++%.bbl: %.aux %.bib ++ $(BIB) $* ++%.aux: %.tex ++ $(TEX) $* ++ ++CLEANFILES = *.aux *.bbl *.blg *.log *.toc ++MAINTAINERCLEANFILES = $(dist_pdf_DATA) +diff --git a/Include/Makefile.am b/Include/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Include/Makefile.am +@@ -0,0 +1,5 @@ ++pkginclude_HEADERS = \ ++ SuiteSparseQR.hpp \ ++ SuiteSparseQR_C.h \ ++ SuiteSparseQR_definitions.h \ ++ spqr.hpp +diff --git a/Makefile.am b/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Makefile.am +@@ -0,0 +1,9 @@ ++ACLOCAL_AMFLAGS = -I m4 ++ ++SUBDIRS = Include Source Matrix Demo Tcov Doc ++EXTRA_DIST = README.txt ++ ++pkgconfig_DATA = spqr.pc ++ ++CODE_COVERAGE_BRANCH_COVERAGE = 1 ++@CODE_COVERAGE_RULES@ +diff --git a/Matrix/Makefile.am b/Matrix/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Matrix/Makefile.am +@@ -0,0 +1,36 @@ ++EXTRA_DIST = \ ++ README.txt ++ ++dist_noinst_DATA = \ ++ GD01_b.mtx \ ++ GD06_theory.mtx \ ++ GD98_a.mtx \ ++ LFAT5.mtx \ ++ Ragusa16.mtx \ ++ Tina_AskCal.mtx \ ++ Tina_AskCal_perm.mtx \ ++ a0.mtx \ ++ a04.mtx \ ++ a1.mtx \ ++ a2.mtx \ ++ a4.mtx \ ++ arrow.mtx \ ++ ash219.mtx \ ++ b1_ss.mtx \ ++ bcspwr01.mtx \ ++ bfwa62.mtx \ ++ c2.mtx \ ++ c32.mtx \ ++ lfat5b.mtx \ ++ lp_share1b.mtx \ ++ lpi_galenet.mtx \ ++ lpi_itest6.mtx \ ++ pwr01b.mtx \ ++ r2.mtx \ ++ s32.mtx \ ++ west0067.mtx \ ++ young1c.mtx \ ++ Franz6_id1959_aug.mtx \ ++ Groebner_id2003_aug.mtx \ ++ lp_e226.mtx \ ++ lp_e226_transposed.mtx +diff --git a/Source/Makefile.am b/Source/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Source/Makefile.am +@@ -0,0 +1,56 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(TBB_CFLAGS) $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) ++if !EXPERT ++AM_CPPFLAGS += -DNEXPERT ++endif ++if TBB ++AM_CPPFLAGS += -DHAVE_TBB ++endif ++ ++lib_LTLIBRARIES = libspqr.la ++ ++libspqr_la_SOURCES = \ ++ SuiteSparseQR.cpp \ ++ SuiteSparseQR_C.cpp \ ++ SuiteSparseQR_expert.cpp \ ++ SuiteSparseQR_qmult.cpp \ ++ spqr_1colamd.cpp \ ++ spqr_1factor.cpp \ ++ spqr_1fixed.cpp \ ++ spqr_analyze.cpp \ ++ spqr_append.cpp \ ++ spqr_assemble.cpp \ ++ spqr_cpack.cpp \ ++ spqr_csize.cpp \ ++ spqr_cumsum.cpp \ ++ spqr_debug.cpp \ ++ spqr_factorize.cpp \ ++ spqr_fcsize.cpp \ ++ spqr_freefac.cpp \ ++ spqr_freenum.cpp \ ++ spqr_freesym.cpp \ ++ spqr_front.cpp \ ++ spqr_fsize.cpp \ ++ spqr_happly.cpp \ ++ spqr_happly_work.cpp \ ++ spqr_hpinv.cpp \ ++ spqr_kernel.cpp \ ++ spqr_larftb.cpp \ ++ spqr_maxcolnorm.cpp \ ++ spqr_panel.cpp \ ++ spqr_parallel.cpp \ ++ spqr_rconvert.cpp \ ++ spqr_rcount.cpp \ ++ spqr_rhpack.cpp \ ++ spqr_rmap.cpp \ ++ spqr_rsolve.cpp \ ++ spqr_shift.cpp \ ++ spqr_stranspose1.cpp \ ++ spqr_stranspose2.cpp \ ++ spqr_tol.cpp \ ++ spqr_trapezoidal.cpp \ ++ spqr_type.cpp ++ ++libspqr_la_LIBADD = $(TBB_LIBS) $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS) $(LAPACK_LIBS) $(BLAS_LIBS) -lm $(CODE_COVERAGE_LIBS) ++libspqr_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) ++libspqr_la_CXXFLAGS = $(AM_CXXFLAGS) $(CODE_COVERAGE_CXXFLAGS) ++libspqr_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION) +diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Tcov/Makefile.am +@@ -0,0 +1,52 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) ++ ++EXTRA_DIST = \ ++ README.txt ++ ++dist_noinst_DATA = \ ++ matrix1.txt \ ++ matrixlist.txt ++ ++if CODE_COVERAGE_ENABLED ++check_PROGRAMS = \ ++ qrtest ++ ++qrtest_SOURCES = qrtestc.c qrtest.cpp ++qrtest_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS) ++ ++MATRICES = \ ++ $(srcdir)/matrix1.txt \ ++ $(srcdir)/matrixlist.txt \ ++ $(top_srcdir)/Matrix/GD01_b.mtx \ ++ $(top_srcdir)/Matrix/GD06_theory.mtx \ ++ $(top_srcdir)/Matrix/GD98_a.mtx \ ++ $(top_srcdir)/Matrix/LFAT5.mtx \ ++ $(top_srcdir)/Matrix/Ragusa16.mtx \ ++ $(top_srcdir)/Matrix/Tina_AskCal.mtx \ ++ $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \ ++ $(top_srcdir)/Matrix/a0.mtx \ ++ $(top_srcdir)/Matrix/a04.mtx \ ++ $(top_srcdir)/Matrix/a1.mtx \ ++ $(top_srcdir)/Matrix/a2.mtx \ ++ $(top_srcdir)/Matrix/a4.mtx \ ++ $(top_srcdir)/Matrix/arrow.mtx \ ++ $(top_srcdir)/Matrix/ash219.mtx \ ++ $(top_srcdir)/Matrix/b1_ss.mtx \ ++ $(top_srcdir)/Matrix/bcspwr01.mtx \ ++ $(top_srcdir)/Matrix/bfwa62.mtx \ ++ $(top_srcdir)/Matrix/c2.mtx \ ++ $(top_srcdir)/Matrix/c32.mtx \ ++ $(top_srcdir)/Matrix/lfat5b.mtx \ ++ $(top_srcdir)/Matrix/lp_share1b.mtx \ ++ $(top_srcdir)/Matrix/lpi_galenet.mtx \ ++ $(top_srcdir)/Matrix/lpi_itest6.mtx \ ++ $(top_srcdir)/Matrix/r2.mtx \ ++ $(top_srcdir)/Matrix/s32.mtx \ ++ $(top_srcdir)/Matrix/west0067.mtx ++ ++check-local: $(check_PROGRAMS) $(MATRICES) ++ ./qrtest $(srcdir)/matrixlist.txt > qrtest_out.txt ++ ./qrtest $(srcdir)/matrix1.txt > qrtest_out1.txt ++endif ++ ++CLEANFILES = qrtest_out.txt qrtest_out1.txt +diff --git a/configure.ac b/configure.ac +new file mode 100644 +--- /dev/null ++++ b/configure.ac +@@ -0,0 +1,119 @@ ++# -*- Autoconf -*- ++# Process this file with autoconf to produce a configure script. ++ ++AC_PREREQ([2.69]) ++AC_INIT([SPQR],[2.0.8],[DrTimothyAldenDavis@gmail.com],[spqr],[http://www.suitesparse.com/]) ++AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp]) ++AC_CONFIG_AUX_DIR([build-aux]) ++AC_CONFIG_MACRO_DIR([m4]) ++AC_CONFIG_HEADERS([config.h]) ++AM_INIT_AUTOMAKE([foreign]) ++AM_SILENT_RULES([yes]) ++LT_INIT([disable-static]) ++ ++# Checks for programs. ++PKG_PROG_PKG_CONFIG ++AC_PROG_INSTALL ++AC_PROG_F77 ++AC_PROG_CC ++AC_PROG_CXX ++AC_LANG([C++]) ++AX_CODE_COVERAGE ++ ++AC_ARG_ENABLE([expert], ++ [AS_HELP_STRING( ++ [--disable-expert], ++ [compile without the min 2-norm solution option])], ++ [], ++ [AS_VAR_SET([enable_expert], [yes])]) ++ ++AC_ARG_WITH([tbb], ++ [AS_HELP_STRING( ++ [--without-tbb], ++ [do not use Intel Threading Building Blocks for multithreading])], ++ [], ++ [AS_VAR_SET([with_tbb], [yes])]) ++ ++AS_VAR_SET([LIBS_SAVED], [$LIBS]) ++ ++# Checks for libraries. ++AC_CHECK_LIB([m], [sqrt]) ++ ++AX_BLAS( ++ [], ++ [AC_MSG_ERROR([cannot find BLAS])]) ++ ++AX_LAPACK( ++ [], ++ [AC_MSG_ERROR([cannot find LAPACK])]) ++ ++PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig]) ++PKG_CHECK_MODULES([CHOLMOD], [cholmod]) ++ ++# Checks for header files. ++AC_CHECK_HEADERS([float.h stdlib.h]) ++ ++AS_IF([test "x$with_tbb" = "xyes"], [ ++ AC_CHECK_HEADERS([tbb/task_scheduler_init.h tbb/task.h]) ++]) ++ ++# Checks for typedefs, structures, and compiler characteristics. ++AC_TYPE_SIZE_T ++ ++# Checks for library functions. ++AC_CHECK_FUNCS([sqrt]) ++ ++AS_VAR_SET([LIBS], [$LIBS_SAVED]) ++ ++AS_IF([test "x$with_tbb" = "xyes"], [ ++ AC_SUBST([TBB_CFLAGS], [""]) ++ AC_SUBST([TBB_LIBS], ["-ltbb"]) ++]) ++ ++AC_MSG_CHECKING([whether to use expert routines]) ++AC_MSG_RESULT([$enable_expert]) ++AM_CONDITIONAL([EXPERT], [test "x$enable_expert" = "xyes"]) ++ ++AC_MSG_CHECKING([whether to use Intel Threading Building Blocks]) ++AC_MSG_RESULT([$with_tbb]) ++AM_CONDITIONAL([TBB], [test "x$with_tbb" = "xyes"]) ++ ++PKG_INSTALLDIR ++AC_CONFIG_FILES([ ++ spqr.pc ++ Makefile ++ Demo/Makefile ++ Doc/Makefile ++ Include/Makefile ++ Matrix/Makefile ++ Source/Makefile ++ Tcov/Makefile ++]) ++#AC_CONFIG_LINKS([Matrix:Matrix]) # Can't link an entire directory? ++AC_CONFIG_LINKS([Matrix/GD01_b.mtx:Matrix/GD01_b.mtx]) ++AC_CONFIG_LINKS([Matrix/GD06_theory.mtx:Matrix/GD06_theory.mtx]) ++AC_CONFIG_LINKS([Matrix/GD98_a.mtx:Matrix/GD98_a.mtx]) ++AC_CONFIG_LINKS([Matrix/LFAT5.mtx:Matrix/LFAT5.mtx]) ++AC_CONFIG_LINKS([Matrix/Ragusa16.mtx:Matrix/Ragusa16.mtx]) ++AC_CONFIG_LINKS([Matrix/Tina_AskCal.mtx:Matrix/Tina_AskCal.mtx]) ++AC_CONFIG_LINKS([Matrix/Tina_AskCal_perm.mtx:Matrix/Tina_AskCal_perm.mtx]) ++AC_CONFIG_LINKS([Matrix/a0.mtx:Matrix/a0.mtx]) ++AC_CONFIG_LINKS([Matrix/a04.mtx:Matrix/a04.mtx]) ++AC_CONFIG_LINKS([Matrix/a1.mtx:Matrix/a1.mtx]) ++AC_CONFIG_LINKS([Matrix/a2.mtx:Matrix/a2.mtx]) ++AC_CONFIG_LINKS([Matrix/a4.mtx:Matrix/a4.mtx]) ++AC_CONFIG_LINKS([Matrix/arrow.mtx:Matrix/arrow.mtx]) ++AC_CONFIG_LINKS([Matrix/ash219.mtx:Matrix/ash219.mtx]) ++AC_CONFIG_LINKS([Matrix/b1_ss.mtx:Matrix/b1_ss.mtx]) ++AC_CONFIG_LINKS([Matrix/bcspwr01.mtx:Matrix/bcspwr01.mtx]) ++AC_CONFIG_LINKS([Matrix/bfwa62.mtx:Matrix/bfwa62.mtx]) ++AC_CONFIG_LINKS([Matrix/c2.mtx:Matrix/c2.mtx]) ++AC_CONFIG_LINKS([Matrix/c32.mtx:Matrix/c32.mtx]) ++AC_CONFIG_LINKS([Matrix/lfat5b.mtx:Matrix/lfat5b.mtx]) ++AC_CONFIG_LINKS([Matrix/lp_share1b.mtx:Matrix/lp_share1b.mtx]) ++AC_CONFIG_LINKS([Matrix/lpi_galenet.mtx:Matrix/lpi_galenet.mtx]) ++AC_CONFIG_LINKS([Matrix/lpi_itest6.mtx:Matrix/lpi_itest6.mtx]) ++AC_CONFIG_LINKS([Matrix/r2.mtx:Matrix/r2.mtx]) ++AC_CONFIG_LINKS([Matrix/s32.mtx:Matrix/s32.mtx]) ++AC_CONFIG_LINKS([Matrix/west0067.mtx:Matrix/west0067.mtx]) ++AC_OUTPUT +diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4 +new file mode 100644 +--- /dev/null ++++ b/m4/ax_blas.m4 +@@ -0,0 +1,238 @@ ++# =========================================================================== ++# https://www.gnu.org/software/autoconf-archive/ax_blas.html ++# =========================================================================== ++# ++# SYNOPSIS ++# ++# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) ++# ++# DESCRIPTION ++# ++# This macro looks for a library that implements the BLAS linear-algebra ++# interface (see http://www.netlib.org/blas/). On success, it sets the ++# BLAS_LIBS output variable to hold the requisite library linkages. ++# ++# To link with BLAS, you should link with: ++# ++# $BLAS_LIBS $LIBS $FLIBS ++# ++# in that order. FLIBS is the output variable of the ++# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is ++# sometimes necessary in order to link with F77 libraries. Users will also ++# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same ++# reason. ++# ++# Many libraries are searched for, from ATLAS to CXML to ESSL. The user ++# may also use --with-blas=<lib> in order to use some specific BLAS ++# library <lib>. In order to link successfully, however, be aware that you ++# will probably need to use the same Fortran compiler (which can be set ++# via the F77 env. var.) as was used to compile the BLAS library. ++# ++# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is ++# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is ++# not found. If ACTION-IF-FOUND is not specified, the default action will ++# define HAVE_BLAS. ++# ++# LICENSE ++# ++# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu> ++# ++# This program is free software: you can redistribute it and/or modify it ++# under the terms of the GNU General Public License as published by the ++# Free Software Foundation, either version 3 of the License, or (at your ++# option) any later version. ++# ++# This program is distributed in the hope that it will be useful, but ++# WITHOUT ANY WARRANTY; without even the implied warranty of ++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General ++# Public License for more details. ++# ++# You should have received a copy of the GNU General Public License along ++# with this program. If not, see <https://www.gnu.org/licenses/>. ++# ++# As a special exception, the respective Autoconf Macro's copyright owner ++# gives unlimited permission to copy, distribute and modify the configure ++# scripts that are the output of Autoconf when processing the Macro. You ++# need not follow the terms of the GNU General Public License when using ++# or distributing such scripts, even though portions of the text of the ++# Macro appear in them. The GNU General Public License (GPL) does govern ++# all other use of the material that constitutes the Autoconf Macro. ++# ++# This special exception to the GPL applies to versions of the Autoconf ++# Macro released by the Autoconf Archive. When you make and distribute a ++# modified version of the Autoconf Macro, you may extend this special ++# exception to the GPL to apply to your modified version as well. ++ ++#serial 15 ++ ++AU_ALIAS([ACX_BLAS], [AX_BLAS]) ++AC_DEFUN([AX_BLAS], [ ++AC_PREREQ(2.50) ++AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS]) ++AC_REQUIRE([AC_CANONICAL_HOST]) ++ax_blas_ok=no ++ ++AC_ARG_WITH(blas, ++ [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])]) ++case $with_blas in ++ yes | "") ;; ++ no) ax_blas_ok=disable ;; ++ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;; ++ *) BLAS_LIBS="-l$with_blas" ;; ++esac ++ ++# Get fortran linker names of BLAS functions to check for. ++AC_F77_FUNC(sgemm) ++AC_F77_FUNC(dgemm) ++ ++ax_blas_save_LIBS="$LIBS" ++LIBS="$LIBS $FLIBS" ++ ++# First, check BLAS_LIBS environment variable ++if test $ax_blas_ok = no; then ++if test "x$BLAS_LIBS" != x; then ++ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" ++ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS]) ++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""]) ++ AC_MSG_RESULT($ax_blas_ok) ++ LIBS="$save_LIBS" ++fi ++fi ++ ++# BLAS linked to by default? (happens on some supercomputers) ++if test $ax_blas_ok = no; then ++ save_LIBS="$LIBS"; LIBS="$LIBS" ++ AC_MSG_CHECKING([if $sgemm is being linked in already]) ++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes]) ++ AC_MSG_RESULT($ax_blas_ok) ++ LIBS="$save_LIBS" ++fi ++ ++# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes ++ BLAS_LIBS="-lopenblas"]) ++fi ++ ++# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(atlas, ATL_xerbla, ++ [AC_CHECK_LIB(f77blas, $sgemm, ++ [AC_CHECK_LIB(cblas, cblas_dgemm, ++ [ax_blas_ok=yes ++ BLAS_LIBS="-lcblas -lf77blas -latlas"], ++ [], [-lf77blas -latlas])], ++ [], [-latlas])]) ++fi ++ ++# BLAS in PhiPACK libraries? (requires generic BLAS lib, too) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(blas, $sgemm, ++ [AC_CHECK_LIB(dgemm, $dgemm, ++ [AC_CHECK_LIB(sgemm, $sgemm, ++ [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"], ++ [], [-lblas])], ++ [], [-lblas])]) ++fi ++ ++# BLAS in Intel MKL library? ++if test $ax_blas_ok = no; then ++ # MKL for gfortran ++ if test x"$ac_cv_fc_compiler_gnu" = xyes; then ++ # 64 bit ++ if test $host_cpu = x86_64; then ++ AC_CHECK_LIB(mkl_gf_lp64, $sgemm, ++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],, ++ [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread]) ++ # 32 bit ++ elif test $host_cpu = i686; then ++ AC_CHECK_LIB(mkl_gf, $sgemm, ++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],, ++ [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread]) ++ fi ++ # MKL for other compilers (Intel, PGI, ...?) ++ else ++ # 64-bit ++ if test $host_cpu = x86_64; then ++ AC_CHECK_LIB(mkl_intel_lp64, $sgemm, ++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],, ++ [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread]) ++ # 32-bit ++ elif test $host_cpu = i686; then ++ AC_CHECK_LIB(mkl_intel, $sgemm, ++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],, ++ [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread]) ++ fi ++ fi ++fi ++# Old versions of MKL ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread]) ++fi ++ ++# BLAS in Apple vecLib library? ++if test $ax_blas_ok = no; then ++ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS" ++ AC_MSG_CHECKING([for $sgemm in -framework vecLib]) ++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"]) ++ AC_MSG_RESULT($ax_blas_ok) ++ LIBS="$save_LIBS" ++fi ++ ++# BLAS in Alpha CXML library? ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"]) ++fi ++ ++# BLAS in Alpha DXML library? (now called CXML, see above) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"]) ++fi ++ ++# BLAS in Sun Performance library? ++if test $ax_blas_ok = no; then ++ if test "x$GCC" != xyes; then # only works with Sun CC ++ AC_CHECK_LIB(sunmath, acosp, ++ [AC_CHECK_LIB(sunperf, $sgemm, ++ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath" ++ ax_blas_ok=yes],[],[-lsunmath])]) ++ fi ++fi ++ ++# BLAS in SCSL library? (SGI/Cray Scientific Library) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"]) ++fi ++ ++# BLAS in SGIMATH library? ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(complib.sgimath, $sgemm, ++ [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"]) ++fi ++ ++# BLAS in IBM ESSL library? (requires generic BLAS lib, too) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(blas, $sgemm, ++ [AC_CHECK_LIB(essl, $sgemm, ++ [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"], ++ [], [-lblas $FLIBS])]) ++fi ++ ++# Generic BLAS library? ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"]) ++fi ++ ++AC_SUBST(BLAS_LIBS) ++ ++LIBS="$ax_blas_save_LIBS" ++ ++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: ++if test x"$ax_blas_ok" = xyes; then ++ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1]) ++ : ++else ++ ax_blas_ok=no ++ $2 ++fi ++])dnl AX_BLAS +diff --git a/m4/ax_code_coverage.m4 b/m4/ax_code_coverage.m4 +new file mode 100644 +--- /dev/null ++++ b/m4/ax_code_coverage.m4 +@@ -0,0 +1,264 @@ ++# =========================================================================== ++# https://www.gnu.org/software/autoconf-archive/ax_code_coverage.html ++# =========================================================================== ++# ++# SYNOPSIS ++# ++# AX_CODE_COVERAGE() ++# ++# DESCRIPTION ++# ++# Defines CODE_COVERAGE_CPPFLAGS, CODE_COVERAGE_CFLAGS, ++# CODE_COVERAGE_CXXFLAGS and CODE_COVERAGE_LIBS which should be included ++# in the CPPFLAGS, CFLAGS CXXFLAGS and LIBS/LIBADD variables of every ++# build target (program or library) which should be built with code ++# coverage support. Also defines CODE_COVERAGE_RULES which should be ++# substituted in your Makefile; and $enable_code_coverage which can be ++# used in subsequent configure output. CODE_COVERAGE_ENABLED is defined ++# and substituted, and corresponds to the value of the ++# --enable-code-coverage option, which defaults to being disabled. ++# ++# Test also for gcov program and create GCOV variable that could be ++# substituted. ++# ++# Note that all optimization flags in CFLAGS must be disabled when code ++# coverage is enabled. ++# ++# Usage example: ++# ++# configure.ac: ++# ++# AX_CODE_COVERAGE ++# ++# Makefile.am: ++# ++# @CODE_COVERAGE_RULES@ ++# my_program_LIBS = ... $(CODE_COVERAGE_LIBS) ... ++# my_program_CPPFLAGS = ... $(CODE_COVERAGE_CPPFLAGS) ... ++# my_program_CFLAGS = ... $(CODE_COVERAGE_CFLAGS) ... ++# my_program_CXXFLAGS = ... $(CODE_COVERAGE_CXXFLAGS) ... ++# ++# This results in a "check-code-coverage" rule being added to any ++# Makefile.am which includes "@CODE_COVERAGE_RULES@" (assuming the module ++# has been configured with --enable-code-coverage). Running `make ++# check-code-coverage` in that directory will run the module's test suite ++# (`make check`) and build a code coverage report detailing the code which ++# was touched, then print the URI for the report. ++# ++# In earlier versions of this macro, CODE_COVERAGE_LDFLAGS was defined ++# instead of CODE_COVERAGE_LIBS. They are both still defined, but use of ++# CODE_COVERAGE_LIBS is preferred for clarity; CODE_COVERAGE_LDFLAGS is ++# deprecated. They have the same value. ++# ++# This code was derived from Makefile.decl in GLib, originally licenced ++# under LGPLv2.1+. ++# ++# LICENSE ++# ++# Copyright (c) 2012, 2016 Philip Withnall ++# Copyright (c) 2012 Xan Lopez ++# Copyright (c) 2012 Christian Persch ++# Copyright (c) 2012 Paolo Borelli ++# Copyright (c) 2012 Dan Winship ++# Copyright (c) 2015 Bastien ROUCARIES ++# ++# This library is free software; you can redistribute it and/or modify it ++# under the terms of the GNU Lesser General Public License as published by ++# the Free Software Foundation; either version 2.1 of the License, or (at ++# your option) any later version. ++# ++# This library is distributed in the hope that it will be useful, but ++# WITHOUT ANY WARRANTY; without even the implied warranty of ++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser ++# General Public License for more details. ++# ++# You should have received a copy of the GNU Lesser General Public License ++# along with this program. If not, see <https://www.gnu.org/licenses/>. ++ ++#serial 24 ++ ++AC_DEFUN([AX_CODE_COVERAGE],[ ++ dnl Check for --enable-code-coverage ++ AC_REQUIRE([AC_PROG_SED]) ++ ++ # allow to override gcov location ++ AC_ARG_WITH([gcov], ++ [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])], ++ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov], ++ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov]) ++ ++ AC_MSG_CHECKING([whether to build with code coverage support]) ++ AC_ARG_ENABLE([code-coverage], ++ AS_HELP_STRING([--enable-code-coverage], ++ [Whether to enable code coverage support]),, ++ enable_code_coverage=no) ++ ++ AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test x$enable_code_coverage = xyes]) ++ AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage]) ++ AC_MSG_RESULT($enable_code_coverage) ++ ++ AS_IF([ test "$enable_code_coverage" = "yes" ], [ ++ # check for gcov ++ AC_CHECK_TOOL([GCOV], ++ [$_AX_CODE_COVERAGE_GCOV_PROG_WITH], ++ [:]) ++ AS_IF([test "X$GCOV" = "X:"], ++ [AC_MSG_ERROR([gcov is needed to do coverage])]) ++ AC_SUBST([GCOV]) ++ ++ dnl Check if gcc is being used ++ AS_IF([ test "$GCC" = "no" ], [ ++ AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage]) ++ ]) ++ ++ AC_CHECK_PROG([LCOV], [lcov], [lcov]) ++ AC_CHECK_PROG([GENHTML], [genhtml], [genhtml]) ++ ++ AS_IF([ test -z "$LCOV" ], [ ++ AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed]) ++ ]) ++ ++ AS_IF([ test -z "$GENHTML" ], [ ++ AC_MSG_ERROR([Could not find genhtml from the lcov package]) ++ ]) ++ ++ dnl Build the code coverage flags ++ dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility ++ CODE_COVERAGE_CPPFLAGS="-DNDEBUG" ++ CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" ++ CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" ++ CODE_COVERAGE_LIBS="-lgcov" ++ CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS" ++ ++ AC_SUBST([CODE_COVERAGE_CPPFLAGS]) ++ AC_SUBST([CODE_COVERAGE_CFLAGS]) ++ AC_SUBST([CODE_COVERAGE_CXXFLAGS]) ++ AC_SUBST([CODE_COVERAGE_LIBS]) ++ AC_SUBST([CODE_COVERAGE_LDFLAGS]) ++ ++ [CODE_COVERAGE_RULES_CHECK=' ++ -$(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) -k check ++ $(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) code-coverage-capture ++'] ++ [CODE_COVERAGE_RULES_CAPTURE=' ++ $(code_coverage_v_lcov_cap)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --capture --output-file "$(CODE_COVERAGE_OUTPUT_FILE).tmp" --test-name "$(call code_coverage_sanitize,$(PACKAGE_NAME)-$(PACKAGE_VERSION))" --no-checksum --compat-libtool $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_OPTIONS) ++ $(code_coverage_v_lcov_ign)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --remove "$(CODE_COVERAGE_OUTPUT_FILE).tmp" "/tmp/*" $(CODE_COVERAGE_IGNORE_PATTERN) --output-file "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_RMOPTS) ++ -@rm -f $(CODE_COVERAGE_OUTPUT_FILE).tmp ++ $(code_coverage_v_genhtml)LANG=C $(GENHTML) $(code_coverage_quiet) $(addprefix --prefix ,$(CODE_COVERAGE_DIRECTORY)) --output-directory "$(CODE_COVERAGE_OUTPUT_DIRECTORY)" --title "$(PACKAGE_NAME)-$(PACKAGE_VERSION) Code Coverage" --legend --show-details "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_GENHTML_OPTIONS) ++ @echo "file://$(abs_builddir)/$(CODE_COVERAGE_OUTPUT_DIRECTORY)/index.html" ++'] ++ [CODE_COVERAGE_RULES_CLEAN=' ++clean: code-coverage-clean ++distclean: code-coverage-clean ++code-coverage-clean: ++ -$(LCOV) --directory $(top_builddir) -z ++ -rm -rf $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_FILE).tmp $(CODE_COVERAGE_OUTPUT_DIRECTORY) ++ -find . \( -name "*.gcda" -o -name "*.gcno" -o -name "*.gcov" \) -delete ++'] ++ ], [ ++ [CODE_COVERAGE_RULES_CHECK=' ++ @echo "Need to reconfigure with --enable-code-coverage" ++'] ++ CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK" ++ CODE_COVERAGE_RULES_CLEAN='' ++ ]) ++ ++[CODE_COVERAGE_RULES=' ++# Code coverage ++# ++# Optional: ++# - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. ++# Multiple directories may be specified, separated by whitespace. ++# (Default: $(top_builddir)) ++# - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated ++# by lcov for code coverage. (Default: ++# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info) ++# - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage ++# reports to be created. (Default: ++# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage) ++# - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, ++# set to 0 to disable it and leave empty to stay with the default. ++# (Default: empty) ++# - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov ++# instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) ++# - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov ++# instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) ++# - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov ++# - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the ++# collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) ++# - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov ++# instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) ++# - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering ++# lcov instance. (Default: empty) ++# - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov ++# instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) ++# - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the ++# genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) ++# - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml ++# instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) ++# - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore ++# ++# The generated report will be titled using the $(PACKAGE_NAME) and ++# $(PACKAGE_VERSION). In order to add the current git hash to the title, ++# use the git-version-gen script, available online. ++ ++# Optional variables ++CODE_COVERAGE_DIRECTORY ?= $(top_builddir) ++CODE_COVERAGE_OUTPUT_FILE ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info ++CODE_COVERAGE_OUTPUT_DIRECTORY ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage ++CODE_COVERAGE_BRANCH_COVERAGE ?= ++CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ ++--rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) ++CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) ++CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" ++CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) ++CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) ++CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= ++CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) ++CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ ++$(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ ++--rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) ++CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) ++CODE_COVERAGE_IGNORE_PATTERN ?= ++ ++code_coverage_v_lcov_cap = $(code_coverage_v_lcov_cap_$(V)) ++code_coverage_v_lcov_cap_ = $(code_coverage_v_lcov_cap_$(AM_DEFAULT_VERBOSITY)) ++code_coverage_v_lcov_cap_0 = @echo " LCOV --capture"\ ++ $(CODE_COVERAGE_OUTPUT_FILE); ++code_coverage_v_lcov_ign = $(code_coverage_v_lcov_ign_$(V)) ++code_coverage_v_lcov_ign_ = $(code_coverage_v_lcov_ign_$(AM_DEFAULT_VERBOSITY)) ++code_coverage_v_lcov_ign_0 = @echo " LCOV --remove /tmp/*"\ ++ $(CODE_COVERAGE_IGNORE_PATTERN); ++code_coverage_v_genhtml = $(code_coverage_v_genhtml_$(V)) ++code_coverage_v_genhtml_ = $(code_coverage_v_genhtml_$(AM_DEFAULT_VERBOSITY)) ++code_coverage_v_genhtml_0 = @echo " GEN " $(CODE_COVERAGE_OUTPUT_DIRECTORY); ++code_coverage_quiet = $(code_coverage_quiet_$(V)) ++code_coverage_quiet_ = $(code_coverage_quiet_$(AM_DEFAULT_VERBOSITY)) ++code_coverage_quiet_0 = --quiet ++ ++# sanitizes the test-name: replaces with underscores: dashes and dots ++code_coverage_sanitize = $(subst -,_,$(subst .,_,$(1))) ++ ++# Use recursive makes in order to ignore errors during check ++check-code-coverage:'"$CODE_COVERAGE_RULES_CHECK"' ++ ++# Capture code coverage data ++code-coverage-capture: code-coverage-capture-hook'"$CODE_COVERAGE_RULES_CAPTURE"' ++ ++# Hook rule executed before code-coverage-capture, overridable by the user ++code-coverage-capture-hook: ++ ++'"$CODE_COVERAGE_RULES_CLEAN"' ++ ++GITIGNOREFILES ?= ++GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) ++ ++A''M_DISTCHECK_CONFIGURE_FLAGS ?= ++A''M_DISTCHECK_CONFIGURE_FLAGS += --disable-code-coverage ++ ++.PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean ++'] ++ ++ AC_SUBST([CODE_COVERAGE_RULES]) ++ m4_ifdef([_AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE([CODE_COVERAGE_RULES])]) ++]) +diff --git a/m4/ax_lapack.m4 b/m4/ax_lapack.m4 +new file mode 100644 +--- /dev/null ++++ b/m4/ax_lapack.m4 +@@ -0,0 +1,131 @@ ++# =========================================================================== ++# https://www.gnu.org/software/autoconf-archive/ax_lapack.html ++# =========================================================================== ++# ++# SYNOPSIS ++# ++# AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) ++# ++# DESCRIPTION ++# ++# This macro looks for a library that implements the LAPACK linear-algebra ++# interface (see http://www.netlib.org/lapack/). On success, it sets the ++# LAPACK_LIBS output variable to hold the requisite library linkages. ++# ++# To link with LAPACK, you should link with: ++# ++# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS ++# ++# in that order. BLAS_LIBS is the output variable of the AX_BLAS macro, ++# called automatically. FLIBS is the output variable of the ++# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is ++# sometimes necessary in order to link with F77 libraries. Users will also ++# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same ++# reason. ++# ++# The user may also use --with-lapack=<lib> in order to use some specific ++# LAPACK library <lib>. In order to link successfully, however, be aware ++# that you will probably need to use the same Fortran compiler (which can ++# be set via the F77 env. var.) as was used to compile the LAPACK and BLAS ++# libraries. ++# ++# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library ++# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it ++# is not found. If ACTION-IF-FOUND is not specified, the default action ++# will define HAVE_LAPACK. ++# ++# LICENSE ++# ++# Copyright (c) 2009 Steven G. Johnson <stevenj@alum.mit.edu> ++# ++# This program is free software: you can redistribute it and/or modify it ++# under the terms of the GNU General Public License as published by the ++# Free Software Foundation, either version 3 of the License, or (at your ++# option) any later version. ++# ++# This program is distributed in the hope that it will be useful, but ++# WITHOUT ANY WARRANTY; without even the implied warranty of ++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General ++# Public License for more details. ++# ++# You should have received a copy of the GNU General Public License along ++# with this program. If not, see <https://www.gnu.org/licenses/>. ++# ++# As a special exception, the respective Autoconf Macro's copyright owner ++# gives unlimited permission to copy, distribute and modify the configure ++# scripts that are the output of Autoconf when processing the Macro. You ++# need not follow the terms of the GNU General Public License when using ++# or distributing such scripts, even though portions of the text of the ++# Macro appear in them. The GNU General Public License (GPL) does govern ++# all other use of the material that constitutes the Autoconf Macro. ++# ++# This special exception to the GPL applies to versions of the Autoconf ++# Macro released by the Autoconf Archive. When you make and distribute a ++# modified version of the Autoconf Macro, you may extend this special ++# exception to the GPL to apply to your modified version as well. ++ ++#serial 8 ++ ++AU_ALIAS([ACX_LAPACK], [AX_LAPACK]) ++AC_DEFUN([AX_LAPACK], [ ++AC_REQUIRE([AX_BLAS]) ++ax_lapack_ok=no ++ ++AC_ARG_WITH(lapack, ++ [AS_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])]) ++case $with_lapack in ++ yes | "") ;; ++ no) ax_lapack_ok=disable ;; ++ -* | */* | *.a | *.so | *.so.* | *.o) LAPACK_LIBS="$with_lapack" ;; ++ *) LAPACK_LIBS="-l$with_lapack" ;; ++esac ++ ++# Get fortran linker name of LAPACK function to check for. ++AC_F77_FUNC(cheev) ++ ++# We cannot use LAPACK if BLAS is not found ++if test "x$ax_blas_ok" != xyes; then ++ ax_lapack_ok=noblas ++ LAPACK_LIBS="" ++fi ++ ++# First, check LAPACK_LIBS environment variable ++if test "x$LAPACK_LIBS" != x; then ++ save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS" ++ AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS]) ++ AC_TRY_LINK_FUNC($cheev, [ax_lapack_ok=yes], [LAPACK_LIBS=""]) ++ AC_MSG_RESULT($ax_lapack_ok) ++ LIBS="$save_LIBS" ++ if test $ax_lapack_ok = no; then ++ LAPACK_LIBS="" ++ fi ++fi ++ ++# LAPACK linked to by default? (is sometimes included in BLAS lib) ++if test $ax_lapack_ok = no; then ++ save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS" ++ AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes]) ++ LIBS="$save_LIBS" ++fi ++ ++# Generic LAPACK library? ++for lapack in lapack lapack_rs6k; do ++ if test $ax_lapack_ok = no; then ++ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" ++ AC_CHECK_LIB($lapack, $cheev, ++ [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS]) ++ LIBS="$save_LIBS" ++ fi ++done ++ ++AC_SUBST(LAPACK_LIBS) ++ ++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: ++if test x"$ax_lapack_ok" = xyes; then ++ ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1]) ++ : ++else ++ ax_lapack_ok=no ++ $2 ++fi ++])dnl AX_LAPACK +diff --git a/spqr.pc.in b/spqr.pc.in +new file mode 100644 +--- /dev/null ++++ b/spqr.pc.in +@@ -0,0 +1,13 @@ ++prefix=@prefix@ ++exec_prefix=@exec_prefix@ ++libdir=@libdir@ ++includedir=@includedir@ ++ ++Name: @PACKAGE_NAME@ ++Description: Multifrontal sparse QR factorization ++Version: @PACKAGE_VERSION@ ++URL: @PACKAGE_URL@ ++Requires.private: cholmod suitesparseconfig ++Libs: -L${libdir} -lspqr ++Libs.private: @TBB_LIBS@ @LAPACK_LIBS@ @BLAS_LIBS@ -lm ++Cflags: -I${includedir}/spqr |