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Diffstat (limited to 'academic/seaview/README')
| -rw-r--r-- | academic/seaview/README | 14 |
1 files changed, 8 insertions, 6 deletions
diff --git a/academic/seaview/README b/academic/seaview/README index 8e1bd893b4b5..21de5ab1c563 100644 --- a/academic/seaview/README +++ b/academic/seaview/README @@ -9,14 +9,17 @@ sequence alignment and molecular phylogeny. Important features are: alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. -3) SeaView computes phylogenetic trees by +3) Seaview drives the Gblocks program to select blocks of + evolutionarily conserved sites. + +4) SeaView computes phylogenetic trees by a) parsimony, using PHYLIP's dnapars/protpars algorithm, b) distance, with NJ or BioNJ algorithms on a variety of evolutionary distances, c) maximum likelihood, driving program PhyML 3.0. -4) SeaView draws phylogenetic trees on screen, PDF or PostScript files -5) SeaView allows to download sequences from EMBL/GenBank/UniProt +5) SeaView draws phylogenetic trees on screen, PDF or PostScript files +6) SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet. For details and citation: @@ -25,6 +28,5 @@ multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27(2):221-224. -Seaview requires fltk as a build depencency, but you need clustalw, -PhyML and muscle, which SeaView drives. All of these are available at -SlackBuilds.org. +This requires fltk as a build dependency, but you also need clustalw, +Gblocks, PhyML, and muscle, all of which SeaView drives. |