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Diffstat (limited to 'academic/seaview/README')
| -rw-r--r-- | academic/seaview/README | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/academic/seaview/README b/academic/seaview/README index 24e334c55f078..c73aa1a016efb 100644 --- a/academic/seaview/README +++ b/academic/seaview/README @@ -1,13 +1,13 @@ SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny. Important features are: -1) SeaView reads and writes various file formats (NEXUS, MSF, - CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences - and of phylogenetic trees. +1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, + FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of + phylogenetic trees. -2) SeaView drives programs muscle or clustalw for multiple sequence - alignment, and also allows to use any external alignment algorithm - able to read and write FASTA-formatted files. +2) SeaView drives programs muscle or Clustal Omega (clustalo) for + multiple sequence alignment, and also allows to use any external + alignment algorithm able to read and write FASTA-formatted files. 3) Seaview drives the Gblocks program to select blocks of evolutionarily conserved sites. @@ -18,7 +18,9 @@ sequence alignment and molecular phylogeny. Important features are: evolutionary distances, c) maximum likelihood, driving program PhyML 3.0. -5) SeaView draws phylogenetic trees on screen, PDF or PostScript files +5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or + PostScript files. + 6) SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet. |