diff options
Diffstat (limited to 'academic/pysam/pysam.SlackBuild')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index d277a692b21a..2e69a15150dd 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -25,8 +25,8 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam -VERSION=${VERSION:-0.19.1} -BUILD=${BUILD:-2} +VERSION=${VERSION:-0.20.0} +BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,7 +80,10 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# pysam linked to htslib-1.15.1; SBo-htslib is at 1.16 +# pysam now at htslib-1.16; SBo-htslib is at 1.16: +# can use system htslib: +export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +export HTSLIB_INCLUDE_DIR=/usr/include #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* |