diff options
Diffstat (limited to 'academic/primer3/primer3.SlackBuild')
| -rw-r--r-- | academic/primer3/primer3.SlackBuild | 32 |
1 files changed, 19 insertions, 13 deletions
diff --git a/academic/primer3/primer3.SlackBuild b/academic/primer3/primer3.SlackBuild index 8e60d3fe02fca..d3ae1b399c1b2 100644 --- a/academic/primer3/primer3.SlackBuild +++ b/academic/primer3/primer3.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for primer3 -# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2011-2018 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,13 +23,13 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=primer3 -VERSION=${VERSION:-2.3.7} +VERSION=${VERSION:-2.4.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then case "$( uname -m )" in - i?86) ARCH=i486 ;; + i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac @@ -40,8 +40,8 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then SLKCFLAGS="-O2 -march=i686 -mtune=i686" @@ -69,6 +69,9 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +# Thanks to Debian for the patch +patch -p1 -i $CWD/gcc-7.patch + cd ./src # Use our CFLAGS @@ -81,8 +84,8 @@ CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ make -# This is recommended, but the tests take a really long time. -# Be patient if you uncomment the next line. +# This is recommended, but the tests take a really long time. Be patient +# if you uncomment the line below. # make test install -D -m755 primer3_core $PKG/usr/bin/primer3_core @@ -97,18 +100,21 @@ ln -s primer3_core primer32_core # Copy configuration files and settings to /usr/share cd $TMP/$PRGNAM-$VERSION mkdir -p $PKG/usr/share/$PRGNAM -cp -a src/primer3_config \ - primer3_v1_1_4_default_settings.txt \ - primer3web_v0_4_0_default_settings.txt \ - primer3web_v3_0_0_default_settings.txt \ - $PKG/usr/share/$PRGNAM +cp -a settings_files src/primer3_config $PKG/usr/share/$PRGNAM + +# Copy the man pages from Debian +mkdir -p $PKG/usr/man/man1 +cp $CWD/man1/* $PKG/usr/man/man1 find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true +find $PKG/usr/man -type f -exec gzip -9 {} \; +for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done + mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - src/release_notes.txt COPYING.txt example primer3_manual.htm \ + src/{release_notes.txt,primer3_manual.htm} LICENSE example README.md \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References |