diff options
Diffstat (limited to 'academic/mkDSSP/makefile.patch')
| -rw-r--r-- | academic/mkDSSP/makefile.patch | 76 |
1 files changed, 76 insertions, 0 deletions
diff --git a/academic/mkDSSP/makefile.patch b/academic/mkDSSP/makefile.patch new file mode 100644 index 000000000000..f50f53a426a5 --- /dev/null +++ b/academic/mkDSSP/makefile.patch @@ -0,0 +1,76 @@ +Description: assorted fixes + [Maarten L. Hekkelman <m.hekkelman@cmbi.ru.nl>] + * DEST_DIR patched to DESTDIR + . + [Laszlo Kajan <lkajan@rostlab.org>] + * stripping is patched out so that it can be done by dh into a debug package + * line echo suppression is removed + * spelling errors in man page fixed + . + Upstream is aware of this patch. +Author: Maarten L. Hekkelman <m.hekkelman@cmbi.ru.nl> +Author: Laszlo Kajan <lkajan@rostlab.org> +--- a/makefile ++++ b/makefile +@@ -11,18 +11,16 @@ + + all: mkdssp + +-include make.config +- + VERSION = 2.1.0 + + DEST_DIR ?= /usr/local + LIB_DIR = $(BOOST_LIB_DIR) + INC_DIR = $(BOOST_INC_DIR) +-BIN_DIR = $(DEST_DIR)/bin +-MAN_DIR = $(DEST_DIR)/man/man1 ++BIN_DIR = $(DESTDIR)$(DEST_DIR)/bin ++MAN_DIR = $(DESTDIR)$(DEST_DIR)/share/man/man1 + +-BOOST_LIBS = thread filesystem program_options iostreams system +-LIBS = $(BOOST_LIBS:%=boost_%$(BOOST_LIB_SUFFIX)) z bz2 ++BOOST_LIBS = thread program_options iostreams system ++LIBS = $(BOOST_LIBS:%=boost_%$(BOOST_LIB_SUFFIX)) + + DEFINES = USE_COMPRESSION LINUX VERSION='"$(VERSION)"' + CXX = g++ +@@ -49,22 +47,19 @@ + OBJECTS = $(OBJ_DIR)/mkdssp.o $(OBJ_DIR)/dssp.o $(OBJ_DIR)/primitives-3d.o $(OBJ_DIR)/structure.o $(OBJ_DIR)/utils.o $(OBJ_DIR)/mas.o + + mkdssp: $(OBJECTS) +- @ echo linking $@ +- @ $(CXX) -static -o $@ $^ $(LDOPTS) ++ $(CXX) -o $@ $^ $(LDOPTS) + +-include $(OBJECTS:%.o=%.d) ++-include $(OBJECTS:%.o=%.d) + + $(OBJECTS:.o=.d): + + $(OBJ_DIR): +- @ mkdir -p $(OBJ_DIR) ++ mkdir -p $(OBJ_DIR) + + $(OBJ_DIR)/%.o: %.cpp | $(OBJ_DIR) +- @ echo compiling $@ +- @ $(CXX) -MD -c -o $@ $< $(CFLAGS) ++ $(CXX) -MD -c -o $@ $< $(CPPFLAGS) $(CFLAGS) + + clean: +- install -d $(BIN_DIR) $(MAN_DIR) + rm -rf $(OBJ_DIR)/* mkdssp + + install: mkdssp +@@ -85,11 +80,3 @@ + @ cp doc/mkdssp.1 $(DIST_NAME)/doc/mkdssp.1 + tar czf $(DIST_NAME).tgz $(DIST_NAME) + cp $(DIST_NAME).tgz dssp_$(VERSION).orig.tar.gz +- +-make.config: +- @echo "creating empty make.config file" +- @echo "# Set local options for make here" > make.config +- @echo "#BOOST_LIB_SUFFIX = -mt" >> make.config +- @echo "#BOOST_LIB_DIR = $(HOME)/projects/boost/lib" >> make.config +- @echo "#BOOST_INC_DIR = $(HOME)/projects/boost/include" >> make.config +- |