diff options
Diffstat (limited to 'academic/bcftools')
| -rw-r--r-- | academic/bcftools/README | 12 | ||||
| -rw-r--r-- | academic/bcftools/bcftools.SlackBuild | 7 | ||||
| -rw-r--r-- | academic/bcftools/bcftools.info | 6 | ||||
| -rw-r--r-- | academic/bcftools/slack-desc | 12 |
4 files changed, 20 insertions, 17 deletions
diff --git a/academic/bcftools/README b/academic/bcftools/README index 731b912643d07..aef002668d7e9 100644 --- a/academic/bcftools/README +++ b/academic/bcftools/README @@ -1,5 +1,9 @@ -Prior to the introduction of HTSlib, SAMtools and BCFtools were distributed in -a single samtools-0.1.x package. -This old version remains available from SBo as samtools-legacy +bcftools (BCF calling tools) contains all the "vcf..." commands which +previously lived in the htslib repository (such as vcfcheck, vcfmerge, +vcfisec, etc.) and the samtools BCF calling from bcftools subdirectory +of the previous samtools. BCFtools are meant as a faster replacement +for most of the perl VCFtools commands. -The BCFtools is now distributed as an individual package. +Prior to the introduction of HTSlib, SAMtools and BCFtools were distributed +in a single samtools-0.1.x package. This old version remains available from +SBo as samtools-legacy. diff --git a/academic/bcftools/bcftools.SlackBuild b/academic/bcftools/bcftools.SlackBuild index 5607ba9d9a234..52bd419da0def 100644 --- a/academic/bcftools/bcftools.SlackBuild +++ b/academic/bcftools/bcftools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for samtools -# Copyright 2017-2018 Rob van Nues # All rights reserved. +# Copyright 2017-2020 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is # permitted provided that the following conditions are met: @@ -23,7 +23,7 @@ PRGNAM=bcftools -VERSION=${VERSION:-1.9} +VERSION=${VERSION:-1.10.2} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -69,7 +69,7 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -#force linking to installed htslib +# Force linking to installed htslib rm -r htslib-$VERSION CFLAGS="$SLKCFLAGS" \ @@ -90,7 +90,6 @@ CXXFLAGS="$SLKCFLAGS" \ --build=$ARCH-slackware-linux make -#make test make install DESTDIR=$PKG find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ diff --git a/academic/bcftools/bcftools.info b/academic/bcftools/bcftools.info index 12d206a836de7..b8201d734dc99 100644 --- a/academic/bcftools/bcftools.info +++ b/academic/bcftools/bcftools.info @@ -1,8 +1,8 @@ PRGNAM="bcftools" -VERSION="1.9" +VERSION="1.10.2" HOMEPAGE="http://www.htslib.org" -DOWNLOAD="https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2" -MD5SUM="c8fb7bb9c9251342b0ecf1e6f0c98335" +DOWNLOAD="https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2" +MD5SUM="081ebb6138f5fdf394cb6a074effadb3" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" diff --git a/academic/bcftools/slack-desc b/academic/bcftools/slack-desc index a5f72be8ed96f..2f85ffb7dd89a 100644 --- a/academic/bcftools/slack-desc +++ b/academic/bcftools/slack-desc @@ -8,12 +8,12 @@ |-----handy-ruler------------------------------------------------------| bcftools: bcftools (BCF calling tools) bcftools: -bcftools: bcftools contains all the "vcf..." commands which previously lived in -bcftools: the htslib repository (such as vcfcheck, vcfmerge, vcfisec, etc.) and -bcftools: the samtools BCF calling from bcftools subdirectory of the previous -bcftools: samtools. BCFtools are meant as a faster replacement for most of the +bcftools: bcftools contains all the "vcf..." commands which previously lived in +bcftools: the htslib repository (such as vcfcheck, vcfmerge, vcfisec, etc.) and +bcftools: the samtools BCF calling from bcftools subdirectory of the previous +bcftools: samtools. BCFtools are meant as a faster replacement for most of the bcftools: perl VCFtools commands. Bcftools comes with its own hstlib sources. bcftools: -bcftools: Home: http://www.htslib.org -bcftools: +bcftools: Homepage: http://www.htslib.org +bcftools: bcftools: |