diff options
Diffstat (limited to 'academic/ViennaRNA')
| -rw-r--r-- | academic/ViennaRNA/ViennaRNA.SlackBuild | 45 | ||||
| -rw-r--r-- | academic/ViennaRNA/ViennaRNA.info | 6 |
2 files changed, 28 insertions, 23 deletions
diff --git a/academic/ViennaRNA/ViennaRNA.SlackBuild b/academic/ViennaRNA/ViennaRNA.SlackBuild index a1b82f6eef16..68465ebbaa98 100644 --- a/academic/ViennaRNA/ViennaRNA.SlackBuild +++ b/academic/ViennaRNA/ViennaRNA.SlackBuild @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=ViennaRNA -VERSION=${VERSION:-2.4.18} +VERSION=${VERSION:-2.5.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -105,24 +105,23 @@ find -L . \ # - SVM Z-score filter in RNALfold # - GNU Scientific Library for RNApvmin -cluster="" ; [ "${CLUSTER:-yes}" != "no" ] && cluster="--with-cluster" -kinwalker="" ; [ "${KINWALKER:-yes}" != "no" ] && kinwalker="--with-kinwalker" +cluster="" ; [ "${CLUSTER:-yes}" != "no" ] && cluster="--with-cluster" +kinwalker="" ; [ "${KINWALKER:-yes}" != "no" ] && kinwalker="--with-kinwalker" # Default enabled features: -forester="" ; [ "${FORESTER:-yes}" != "yes" ] && forester="--without-forester" -kinfold="" ; [ "${KINFOLD:-yes}" != "yes" ] && kinwalk="--without-kinfold" -rnalocmin="" ; [ "${RNALOCMIN:-yes}" != "yes" ] && rnalocmin="--without-rnalocmin" -perl="" ; [ "${PERL:-yes}" != "yes" ] && perl="--without-perl" - -python3="" ; [ "${PYTHON3:-yes}" != "yes" ] && python3="--without-python3" -swig="" ; [ "${SWIG:-yes}" != "yes" ] && swig="--without-swig" -simd="" ; [ "${SIMD:-yes}" != "yes" ] && simd="--disable-simd" -lto="" ; [ "${LTO:-yes}" != "yes" ] && lto="--disable-lto" -openmp="" ; [ "${OPENMP:-yes}" != "yes" ] && openmp="--disable-openmp" -pthreads="" ; [ "${PTHREADS:-yes}" != "yes" ] && pthreads="--disable-pthreads" -svm="" ; [ "${SVM:-yes}" != "yes" ] && svm="--without-svm" -gsl="" ; [ "${GSL:-yes}" != "yes" ] && gsl="--without-gsl" -# Default to python3 (above) only; -python="" ; [ "${PYTHON:-no}" != "yes" ] && python="--without-python" +forester="" ; [ "${FORESTER:-yes}" != "no" ] && forester="--with-forester" +kinfold="" ; [ "${KINFOLD:-yes}" != "no" ] && kinwalk="--with-kinfold" +rnalocmin="" ; [ "${RNALOCMIN:-yes}" != "no" ] && rnalocmin="--with-rnalocmin" +perl="" ; [ "${PERL:-yes}" != "no" ] && perl="--with-perl" +# python = python3 +python="" ; [ "${PYTHON:-yes}" != "no" ] && python="--with-python" +swig="" ; [ "${SWIG:-yes}" != "no" ] && swig="--with-swig" +simd="" ; [ "${SIMD:-yes}" != "no" ] && simd="--enable-simd" +lto="" ; [ "${LTO:-yes}" != "no" ] && lto="--enable-lto" +openmp="" ; [ "${OPENMP:-yes}" != "no" ] && openmp="--enable-openmp" +pthreads="" ; [ "${PTHREADS:-yes}" != "no" ] && pthreads="--enable-pthreads" +svm="" ; [ "${SVM:-yes}" != "no" ] && svm="--with-svm" +gsl="" ; [ "${GSL:-yes}" != "no" ] && gsl="--with-gsl" +json="" ; [ "${JSON:-yes}" != "no" ] && json="--with-json" CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ @@ -132,6 +131,11 @@ CXXFLAGS="$SLKCFLAGS" \ --mandir=/usr/man \ --docdir=/usr/doc/$PRGNAM-$VERSION \ --build=$ARCH-slackware-linux \ + --with-python2=no \ + --with-doc=no \ + $cluster \ + $kinwalker \ + $forester \ $cluster \ $kinwalker \ $forester \ @@ -139,14 +143,15 @@ CXXFLAGS="$SLKCFLAGS" \ $rnalocmin \ $perl \ $python \ - $python3 \ $swig \ $simd \ $lto \ $openmp \ $pthreads \ $svm \ - $gsl || exit 1 + $gsl \ + $json \ + || exit 1 make make install DESTDIR=$PKG diff --git a/academic/ViennaRNA/ViennaRNA.info b/academic/ViennaRNA/ViennaRNA.info index d87661b196c7..f4a91c9d7e41 100644 --- a/academic/ViennaRNA/ViennaRNA.info +++ b/academic/ViennaRNA/ViennaRNA.info @@ -1,8 +1,8 @@ PRGNAM="ViennaRNA" -VERSION="2.4.18" +VERSION="2.5.0" HOMEPAGE="https://www.tbi.univie.ac.at/RNA" -DOWNLOAD="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ViennaRNA-2.4.18.tar.gz" -MD5SUM="902ac85cff08fc4b7d89a63786a18ca3" +DOWNLOAD="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_5_x/ViennaRNA-2.5.0.tar.gz" +MD5SUM="48be55f33d08d01b4778ab78eec51a69" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" |