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Diffstat (limited to 'academic/RepeatMasker/README.SLACKWARE')
| -rw-r--r-- | academic/RepeatMasker/README.SLACKWARE | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/academic/RepeatMasker/README.SLACKWARE b/academic/RepeatMasker/README.SLACKWARE new file mode 100644 index 0000000000000..dd3313fd62f64 --- /dev/null +++ b/academic/RepeatMasker/README.SLACKWARE @@ -0,0 +1,31 @@ +After install go fo /opt/RepeatMasker and run the RepeatMasker +Configuration Program: + +# perl ./configure + +Paths are as follows: + +**PERL PROGRAM** +/usr/bin/perl + +**REPEATMASKER INSTALLATION DIRECTORY** +/opt/RepeatMasker + +**TRF PROGRAM** +/usr/bin/trf + +Add a Search Engine: +1. CrossMatch: you should obtain this yourself, with the proper + license, following the instructions here http://www.phrap.org/ +2. RMBlast - NCBI Blast with RepeatMasker extensions: this is + available from SBo. +3. WUBlast/ABBlast (required by DupMasker): you should obtain this + yourself, with the proper license, following the instructions here + https://blast.advbiocomp.com/licensing/ +4. HMMER3.1 & DFAM: this is available from SBo. + +**RMBlast (rmblastn) INSTALLATION PATH** +/usr/bin + +**HMMER INSTALLATION PATH** +/usr/bin |