diff options
| -rw-r--r-- | academic/vcftools/make.patch | 19 | ||||
| -rw-r--r-- | academic/vcftools/slack-desc | 2 | ||||
| -rw-r--r-- | academic/vcftools/vcftools.SlackBuild | 18 | ||||
| -rw-r--r-- | academic/vcftools/vcftools.info | 8 |
4 files changed, 15 insertions, 32 deletions
diff --git a/academic/vcftools/make.patch b/academic/vcftools/make.patch deleted file mode 100644 index 7c3ff55deb0af..0000000000000 --- a/academic/vcftools/make.patch +++ /dev/null @@ -1,19 +0,0 @@ -Description: do not use MAKEFLAGS and not MANDIR -Author: Thorsten Alteholz <debian@alteholz.de> -Last-Update: 2014-04-03 -Index: vcftools_0.1.12/Makefile -=================================================================== ---- vcftools_0.1.12.orig/Makefile 2014-04-04 10:37:59.000000000 +0200 -+++ vcftools_0.1.12/Makefile 2014-04-04 10:38:34.000000000 +0200 -@@ -25,9 +25,8 @@ - - DIRS = cpp perl - install: -- @mkdir -p $(BINDIR); mkdir -p $(MODDIR); mkdir -p $(MANDIR); \ -- cp ${PREFIX}/cpp/vcftools.1.gz $(MANDIR); \ -- for dir in $(DIRS); do cd $$dir && $(MAKE) $(MAKEFLAGS) && cd ..; done -+ @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \ -+ for dir in $(DIRS); do cd $$dir && $(MAKE) && cd ..; done - - clean: - @for dir in $(DIRS); do cd $$dir && $(MAKE) clean && cd ..; done diff --git a/academic/vcftools/slack-desc b/academic/vcftools/slack-desc index 6589ecf88ca35..7cbadbcbbf6e6 100644 --- a/academic/vcftools/slack-desc +++ b/academic/vcftools/slack-desc @@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some vcftools: basic population genetic statistics. vcftools: vcftools: Home: http://vcftools.sourceforge.net/ -vcftools: References: /usr/doc/vcftools-0.1.12a/References +vcftools: References: /usr/doc/vcftools-0.1.12b/References vcftools: diff --git a/academic/vcftools/vcftools.SlackBuild b/academic/vcftools/vcftools.SlackBuild index 4c69a76a95695..624601bdb34b0 100644 --- a/academic/vcftools/vcftools.SlackBuild +++ b/academic/vcftools/vcftools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for vcftools -# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=vcftools -VERSION=${VERSION:-0.1.12a} +VERSION=${VERSION:-0.1.12b} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -69,22 +69,21 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# Thanks to Debian for the patches -patch -p1 -i $CWD/make.patch +# Thanks to Debian for the patch patch -p1 -i $CWD/use-dpkg-buildflags.patch # Set the proper, architecture-specific path sed -i "s:/lib/perl5/site_perl:/lib${LIBDIRSUFFIX}/perl5:g" Makefile -# It seems that if you run just "make" as root, it will _install_ the -# executables and perl files before the package is even created... CFLAGS="$SLKCFLAGS" \ CPPFLAGS="$SLKCFLAGS" \ PREFIX=$PKG/usr \ make install -# Copy man page -install -D -m644 cpp/vcftools.1.gz $PKG/usr/man/man1/vcftools.1.gz +# Remove this and copy the man page to its proper place +rm -rf $PKG/usr/bin/man1 +mkdir -p $PKG//usr/man/man1 +cp cpp/vcftools.1 $PKG/usr/man/man1 # Copy examples mkdir -p $PKG/usr/share/$PRGNAM @@ -93,6 +92,9 @@ cp -a examples $PKG/usr/share/$PRGNAM find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true +find $PKG/usr/man -type f -exec gzip -9 {} \; +for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done + mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a README.txt perl/ChangeLog website/*.pdf $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/vcftools/vcftools.info b/academic/vcftools/vcftools.info index 77a7dab1c5fa1..e30951603f99e 100644 --- a/academic/vcftools/vcftools.info +++ b/academic/vcftools/vcftools.info @@ -1,10 +1,10 @@ PRGNAM="vcftools" -VERSION="0.1.12a" +VERSION="0.1.12b" HOMEPAGE="http://vcftools.sourceforge.net/" -DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.12a.tar.gz" -MD5SUM="ca2ab768ed741623263dbe123cac428b" +DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.12b.tar.gz" +MD5SUM="662758d1139c138cf5a0239ed99f12c2" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="" +REQUIRES="tabix" MAINTAINER="Petar Petrov" EMAIL="petar.petrov@student.oulu.fi" |