diff options
| -rw-r--r-- | academic/samtools/README | 28 | ||||
| -rw-r--r-- | academic/samtools/samtools.SlackBuild | 6 | ||||
| -rw-r--r-- | academic/samtools/samtools.info | 6 |
3 files changed, 20 insertions, 20 deletions
diff --git a/academic/samtools/README b/academic/samtools/README index 857bfbeaa7539..d8e2540720ccd 100644 --- a/academic/samtools/README +++ b/academic/samtools/README @@ -1,16 +1,16 @@ -SAM (Sequence Alignment/Map) format is a generic format for storing large -nucleotide sequence alignments. The original samtools package has been split -into three separate but tightly coordinated projects: htslib (C library for -handling high-throughput sequencing data), samtools (for handling SAM, BAM, -CRAM), and bcftools (for handling VCF and BCF). +SAM (Sequence Alignment/Map) format is a generic format for storing +large nucleotide sequence alignments. The original samtools package has +been split into three separate but tightly coordinated projects: htslib +(C library for handling high-throughput sequencing data), samtools (for +handling SAM, BAM, CRAM), and bcftools (for handling VCF and BCF). -Samtools is now distributed as an individual package. Installation is set up -so that the code uses an external HTSlib (also at SBo). Although deprecated -upstream, in the case that people need parts of samtools-legacy (e.g header -files or libbam) these can be installed from this package by modifying the -samtools.Slackbuild. Note that the sam.h of htslib differs from sam.h coming -with samtools. +Samtools is now distributed as an individual package. Installation is +set up so that the code uses an external HTSlib (also at SBo). Although +deprecated upstream, in the case that people need parts of +samtools-legacy (e.g header files or libbam) these can be installed from +this package by modifying the samtools.Slackbuild. Note that the sam.h +of htslib differs from sam.h coming with samtools. -Prior to the introduction of HTSlib, SAMtools and BCFtools were distributed -in a single samtools-0.1.x package. This old version remains available from -SBo as samtools-legacy. +Prior to the introduction of HTSlib, SAMtools and BCFtools were +distributed in a single samtools-0.1.x package. This old version remains +available from SBo as samtools-legacy. diff --git a/academic/samtools/samtools.SlackBuild b/academic/samtools/samtools.SlackBuild index 4a7efb30d8a24..da9e176475308 100644 --- a/academic/samtools/samtools.SlackBuild +++ b/academic/samtools/samtools.SlackBuild @@ -22,8 +22,8 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -PRGNAM=samtools -VERSION=${VERSION:-1.10} +PRGNAM=samtools +VERSION=${VERSION:-1.11} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -117,7 +117,7 @@ mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ AUTHORS LICENSE README INSTALL NEWS examples \ $PKG/usr/doc/$PRGNAM-$VERSION -cp $CWD/README.references $PKG/usr/doc/$PRGNAM-$VERSION +cp $CWD/README $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild mkdir -p $PKG/install diff --git a/academic/samtools/samtools.info b/academic/samtools/samtools.info index 05fe9a33a040e..2d42d9d71564b 100644 --- a/academic/samtools/samtools.info +++ b/academic/samtools/samtools.info @@ -1,8 +1,8 @@ PRGNAM="samtools" -VERSION="1.10" +VERSION="1.11" HOMEPAGE="http://www.htslib.org" -DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.10/samtools-1.10.tar.bz2" -MD5SUM="506b0b9b2628e1f3bbedd77855b4c709" +DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.11/samtools-1.11.tar.bz2" +MD5SUM="9fd052652a9ceb56fc1098e63f596330" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" |