diff options
| -rw-r--r-- | academic/cholmod/cholmod.SlackBuild | 6 | ||||
| -rw-r--r-- | academic/cholmod/cholmod.info | 6 | ||||
| -rw-r--r-- | academic/cholmod/patches/autoconfiscate.diff | 157 |
3 files changed, 88 insertions, 81 deletions
diff --git a/academic/cholmod/cholmod.SlackBuild b/academic/cholmod/cholmod.SlackBuild index 042346c4711e0..2116fba3e4c6b 100644 --- a/academic/cholmod/cholmod.SlackBuild +++ b/academic/cholmod/cholmod.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for CHOLMOD -# Copyright 2013-2018 Kyle Guinn <elyk03@gmail.com>, USA +# Copyright 2013-2019 Kyle Guinn <elyk03@gmail.com> # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,8 +25,8 @@ PRGNAM=cholmod SRCNAM=SuiteSparse SUBDIR=CHOLMOD -VERSION=${VERSION:-3.0.12} -SRCVER=${SRCVER:-5.2.0} +VERSION=${VERSION:-3.0.13} +SRCVER=${SRCVER:-5.4.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/cholmod/cholmod.info b/academic/cholmod/cholmod.info index 585dddc05417f..954e244269117 100644 --- a/academic/cholmod/cholmod.info +++ b/academic/cholmod/cholmod.info @@ -1,8 +1,8 @@ PRGNAM="cholmod" -VERSION="3.0.12" +VERSION="3.0.13" HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html" -DOWNLOAD="http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.2.0.tar.gz" -MD5SUM="8e625539dbeed061cc62fbdfed9be7cf" +DOWNLOAD="http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.4.0.tar.gz" +MD5SUM="4a6d4e74fc44c503f52996ae95cad03a" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="blas lapack suitesparseconfig amd camd colamd ccolamd" diff --git a/academic/cholmod/patches/autoconfiscate.diff b/academic/cholmod/patches/autoconfiscate.diff index dd9746043caac..66a831b846c03 100644 --- a/academic/cholmod/patches/autoconfiscate.diff +++ b/academic/cholmod/patches/autoconfiscate.diff @@ -1469,7 +1469,7 @@ new file mode 100644 +# Process this file with autoconf to produce a configure script. + +AC_PREREQ([2.69]) -+AC_INIT([CHOLMOD],[3.0.12],[DrTimothyAldenDavis@gmail.com],[cholmod],[http://www.suitesparse.com/]) ++AC_INIT([CHOLMOD],[3.0.13],[DrTimothyAldenDavis@gmail.com],[cholmod],[http://www.suitesparse.com/]) +AC_CONFIG_SRCDIR([Core/cholmod_common.c]) +AC_CONFIG_AUX_DIR([build-aux]) +AC_CONFIG_MACRO_DIR([m4]) @@ -1666,7 +1666,7 @@ new file mode 100644 + +AC_SUBST([CHOLMOD_REQUIRES]) + -+PKG_INSTALLDIR ++m4_ifdef([PKG_INSTALLDIR], [PKG_INSTALLDIR], [AC_SUBST([pkgconfigdir], [${libdir}/pkgconfig])]) +AC_CONFIG_FILES([ + cholmod.pc + Makefile @@ -1756,11 +1756,11 @@ new file mode 100644 +# modified version of the Autoconf Macro, you may extend this special +# exception to the GPL to apply to your modified version as well. + -+#serial 15 ++#serial 16 + +AU_ALIAS([ACX_BLAS], [AX_BLAS]) +AC_DEFUN([AX_BLAS], [ -+AC_PREREQ(2.50) ++AC_PREREQ([2.55]) +AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS]) +AC_REQUIRE([AC_CANONICAL_HOST]) +ax_blas_ok=no @@ -1786,7 +1786,7 @@ new file mode 100644 +if test "x$BLAS_LIBS" != x; then + save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" + AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS]) -+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""]) ++ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes], [BLAS_LIBS=""]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi @@ -1796,7 +1796,7 @@ new file mode 100644 +if test $ax_blas_ok = no; then + save_LIBS="$LIBS"; LIBS="$LIBS" + AC_MSG_CHECKING([if $sgemm is being linked in already]) -+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes]) ++ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi @@ -1867,7 +1867,7 @@ new file mode 100644 +if test $ax_blas_ok = no; then + save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS" + AC_MSG_CHECKING([for $sgemm in -framework vecLib]) -+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"]) ++ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi @@ -1933,7 +1933,7 @@ diff --git a/m4/ax_code_coverage.m4 b/m4/ax_code_coverage.m4 new file mode 100644 --- /dev/null +++ b/m4/ax_code_coverage.m4 -@@ -0,0 +1,264 @@ +@@ -0,0 +1,271 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_code_coverage.html +# =========================================================================== @@ -2011,68 +2011,48 @@ new file mode 100644 +# You should have received a copy of the GNU Lesser General Public License +# along with this program. If not, see <https://www.gnu.org/licenses/>. + -+#serial 24 ++#serial 27 + -+AC_DEFUN([AX_CODE_COVERAGE],[ -+ dnl Check for --enable-code-coverage -+ AC_REQUIRE([AC_PROG_SED]) ++AC_DEFUN([_AX_CODE_COVERAGE_ENABLED],[ ++ # check for gcov ++ AC_CHECK_TOOL([GCOV], ++ [$_AX_CODE_COVERAGE_GCOV_PROG_WITH], ++ [:]) ++ AS_IF([test "X$GCOV" = "X:"], ++ [AC_MSG_ERROR([gcov is needed to do coverage])]) ++ AC_SUBST([GCOV]) + -+ # allow to override gcov location -+ AC_ARG_WITH([gcov], -+ [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])], -+ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov], -+ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov]) ++ dnl Check if gcc is being used ++ AS_IF([ test "$GCC" = "no" ], [ ++ AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage]) ++ ]) + -+ AC_MSG_CHECKING([whether to build with code coverage support]) -+ AC_ARG_ENABLE([code-coverage], -+ AS_HELP_STRING([--enable-code-coverage], -+ [Whether to enable code coverage support]),, -+ enable_code_coverage=no) ++ AC_CHECK_PROG([LCOV], [lcov], [lcov]) ++ AC_CHECK_PROG([GENHTML], [genhtml], [genhtml]) + -+ AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test x$enable_code_coverage = xyes]) -+ AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage]) -+ AC_MSG_RESULT($enable_code_coverage) ++ AS_IF([ test x"$LCOV" = x ], [ ++ AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed]) ++ ]) + -+ AS_IF([ test "$enable_code_coverage" = "yes" ], [ -+ # check for gcov -+ AC_CHECK_TOOL([GCOV], -+ [$_AX_CODE_COVERAGE_GCOV_PROG_WITH], -+ [:]) -+ AS_IF([test "X$GCOV" = "X:"], -+ [AC_MSG_ERROR([gcov is needed to do coverage])]) -+ AC_SUBST([GCOV]) -+ -+ dnl Check if gcc is being used -+ AS_IF([ test "$GCC" = "no" ], [ -+ AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage]) -+ ]) -+ -+ AC_CHECK_PROG([LCOV], [lcov], [lcov]) -+ AC_CHECK_PROG([GENHTML], [genhtml], [genhtml]) -+ -+ AS_IF([ test -z "$LCOV" ], [ -+ AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed]) -+ ]) -+ -+ AS_IF([ test -z "$GENHTML" ], [ -+ AC_MSG_ERROR([Could not find genhtml from the lcov package]) -+ ]) -+ -+ dnl Build the code coverage flags -+ dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility -+ CODE_COVERAGE_CPPFLAGS="-DNDEBUG" -+ CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" -+ CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" -+ CODE_COVERAGE_LIBS="-lgcov" -+ CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS" -+ -+ AC_SUBST([CODE_COVERAGE_CPPFLAGS]) -+ AC_SUBST([CODE_COVERAGE_CFLAGS]) -+ AC_SUBST([CODE_COVERAGE_CXXFLAGS]) -+ AC_SUBST([CODE_COVERAGE_LIBS]) -+ AC_SUBST([CODE_COVERAGE_LDFLAGS]) -+ -+ [CODE_COVERAGE_RULES_CHECK=' ++ AS_IF([ test x"$GENHTML" = x ], [ ++ AC_MSG_ERROR([Could not find genhtml from the lcov package]) ++ ]) ++ ++ dnl Build the code coverage flags ++ dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility ++ CODE_COVERAGE_CPPFLAGS="-DNDEBUG" ++ CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" ++ CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" ++ CODE_COVERAGE_LIBS="-lgcov" ++ CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS" ++ ++ AC_SUBST([CODE_COVERAGE_CPPFLAGS]) ++ AC_SUBST([CODE_COVERAGE_CFLAGS]) ++ AC_SUBST([CODE_COVERAGE_CXXFLAGS]) ++ AC_SUBST([CODE_COVERAGE_LIBS]) ++ AC_SUBST([CODE_COVERAGE_LDFLAGS]) ++ ++ [CODE_COVERAGE_RULES_CHECK=' + -$(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) -k check + $(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) code-coverage-capture +'] @@ -2091,12 +2071,39 @@ new file mode 100644 + -rm -rf $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_FILE).tmp $(CODE_COVERAGE_OUTPUT_DIRECTORY) + -find . \( -name "*.gcda" -o -name "*.gcno" -o -name "*.gcov" \) -delete +'] -+ ], [ -+ [CODE_COVERAGE_RULES_CHECK=' ++]) ++ ++AC_DEFUN([_AX_CODE_COVERAGE_DISABLED],[ ++ [CODE_COVERAGE_RULES_CHECK=' + @echo "Need to reconfigure with --enable-code-coverage" -+'] -+ CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK" -+ CODE_COVERAGE_RULES_CLEAN='' ++ '] ++ CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK" ++ CODE_COVERAGE_RULES_CLEAN='' ++]) ++ ++AC_DEFUN([AX_CODE_COVERAGE],[ ++ dnl Check for --enable-code-coverage ++ ++ # allow to override gcov location ++ AC_ARG_WITH([gcov], ++ [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])], ++ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov], ++ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov]) ++ ++ AC_MSG_CHECKING([whether to build with code coverage support]) ++ AC_ARG_ENABLE([code-coverage], ++ AS_HELP_STRING([--enable-code-coverage], ++ [Whether to enable code coverage support]),, ++ enable_code_coverage=no) ++ ++ AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test "x$enable_code_coverage" = xyes]) ++ AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage]) ++ AC_MSG_RESULT($enable_code_coverage) ++ ++ AS_IF([ test "x$enable_code_coverage" = xyes ], [ ++ _AX_CODE_COVERAGE_ENABLED ++ ], [ ++ _AX_CODE_COVERAGE_DISABLED + ]) + +[CODE_COVERAGE_RULES=' @@ -2157,6 +2164,9 @@ new file mode 100644 +CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) +CODE_COVERAGE_IGNORE_PATTERN ?= + ++GITIGNOREFILES ?= ++GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) ++ +code_coverage_v_lcov_cap = $(code_coverage_v_lcov_cap_$(V)) +code_coverage_v_lcov_cap_ = $(code_coverage_v_lcov_cap_$(AM_DEFAULT_VERBOSITY)) +code_coverage_v_lcov_cap_0 = @echo " LCOV --capture"\ @@ -2186,9 +2196,6 @@ new file mode 100644 + +'"$CODE_COVERAGE_RULES_CLEAN"' + -+GITIGNOREFILES ?= -+GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) -+ +A''M_DISTCHECK_CONFIGURE_FLAGS ?= +A''M_DISTCHECK_CONFIGURE_FLAGS += --disable-code-coverage + @@ -2269,7 +2276,7 @@ new file mode 100644 +# modified version of the Autoconf Macro, you may extend this special +# exception to the GPL to apply to your modified version as well. + -+#serial 8 ++#serial 9 + +AU_ALIAS([ACX_LAPACK], [AX_LAPACK]) +AC_DEFUN([AX_LAPACK], [ @@ -2298,7 +2305,7 @@ new file mode 100644 +if test "x$LAPACK_LIBS" != x; then + save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS" + AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS]) -+ AC_TRY_LINK_FUNC($cheev, [ax_lapack_ok=yes], [LAPACK_LIBS=""]) ++ AC_LINK_IFELSE([AC_LANG_CALL([], [$cheev])], [ax_lapack_ok=yes], [LAPACK_LIBS=""]) + AC_MSG_RESULT($ax_lapack_ok) + LIBS="$save_LIBS" + if test $ax_lapack_ok = no; then |