diff options
| -rw-r--r-- | libraries/CHOLMOD/CHOLMOD.SlackBuild | 10 | ||||
| -rw-r--r-- | libraries/CHOLMOD/CHOLMOD.info | 6 | ||||
| -rw-r--r-- | libraries/CHOLMOD/autotoolize.diff | 130 | ||||
| -rw-r--r-- | libraries/CHOLMOD/slack-desc | 2 |
4 files changed, 87 insertions, 61 deletions
diff --git a/libraries/CHOLMOD/CHOLMOD.SlackBuild b/libraries/CHOLMOD/CHOLMOD.SlackBuild index 180c5ae01011..58cae4c9e8d6 100644 --- a/libraries/CHOLMOD/CHOLMOD.SlackBuild +++ b/libraries/CHOLMOD/CHOLMOD.SlackBuild @@ -4,7 +4,7 @@ # Written by Kyle Guinn <elyk03@gmail.com> PRGNAM=CHOLMOD -VERSION=${VERSION:-1.7.1} +VERSION=${VERSION:-1.7.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -38,6 +38,9 @@ else LIBDIRSUFFIX="" fi +# Recommended by SuiteSparse +SLKCFLAGS="$SLKCFLAGS -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" + set -e rm -rf $PKG @@ -57,14 +60,17 @@ fi autoreconf -vif CFLAGS="$SLKCFLAGS" \ -CXXFLAGS="$SLKCFLAGS" \ +FFLAGS="$SLKCFLAGS" \ ./configure \ --prefix=/usr \ --libdir=/usr/lib${LIBDIRSUFFIX} \ --sysconfdir=/etc \ --localstatedir=/var \ --mandir=/usr/man \ + --infodir=/usr/info \ --docdir=/usr/doc/$PRGNAM-$VERSION \ + --enable-shared \ + --disable-static \ --build=$ARCH-slackware-linux make diff --git a/libraries/CHOLMOD/CHOLMOD.info b/libraries/CHOLMOD/CHOLMOD.info index 0150502295d6..03f413b3aaa6 100644 --- a/libraries/CHOLMOD/CHOLMOD.info +++ b/libraries/CHOLMOD/CHOLMOD.info @@ -1,8 +1,8 @@ PRGNAM="CHOLMOD" -VERSION="1.7.1" +VERSION="1.7.3" HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod/" -DOWNLOAD="http://www.cise.ufl.edu/research/sparse/cholmod/CHOLMOD-1.7.1.tar.gz" -MD5SUM="9032c5724bee43ccd8f4546338a29fac" +DOWNLOAD="http://www.cise.ufl.edu/research/sparse/cholmod/CHOLMOD-1.7.3.tar.gz" +MD5SUM="e3bcfeefe40a2f3ef712e1bd3ec36781" DOWNLOAD_x86_64="" MD5SUM_x86_64="" MAINTAINER="Kyle Guinn" diff --git a/libraries/CHOLMOD/autotoolize.diff b/libraries/CHOLMOD/autotoolize.diff index e35f84125ec2..3bb7f6c8ebad 100644 --- a/libraries/CHOLMOD/autotoolize.diff +++ b/libraries/CHOLMOD/autotoolize.diff @@ -3,7 +3,7 @@ new file mode 100644 --- /dev/null +++ b/Check/Makefile.am @@ -0,0 +1,24 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -32,7 +32,7 @@ new file mode 100644 --- /dev/null +++ b/Cholesky/Makefile.am @@ -0,0 +1,41 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -64,11 +64,11 @@ new file mode 100644 + libcholesky.la + +libcholeskyi_la_SOURCES = $(CHOLESKYSRC) -+libcholeskyi_la_LIBADD = -lcolamd -lamd -lm ++libcholeskyi_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm +libcholeskyi_la_CPPFLAGS = $(AM_CPPFLAGS) + +libcholeskyl_la_SOURCES = $(CHOLESKYSRC) -+libcholeskyl_la_LIBADD = -lcolamd -lamd -lm ++libcholeskyl_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm +libcholeskyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG + +libcholesky_la_SOURCES = @@ -78,7 +78,7 @@ new file mode 100644 --- /dev/null +++ b/Core/Makefile.am @@ -0,0 +1,43 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -126,7 +126,7 @@ new file mode 100644 --- /dev/null +++ b/Demo/Makefile.am @@ -0,0 +1,51 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -421,16 +421,18 @@ diff --git a/Include/Makefile.am b/Include/Makefile.am new file mode 100644 --- /dev/null +++ b/Include/Makefile.am -@@ -0,0 +1,40 @@ +@@ -0,0 +1,42 @@ +EXTRA_DIST = \ + License.txt \ + README.txt + ++pkgincludedir = $(includedir)/cholmod ++ +# Automatically generated headers -+nodist_include_HEADERS = \ ++nodist_pkginclude_HEADERS = \ + cholmod_config.h + -+include_HEADERS = \ ++pkginclude_HEADERS = \ + cholmod.h \ + cholmod_blas.h \ + cholmod_complexity.h \ @@ -440,27 +442,27 @@ new file mode 100644 + cholmod_template.h + +if MOD_CHECK -+include_HEADERS += cholmod_check.h ++pkginclude_HEADERS += cholmod_check.h +endif + +if MOD_CHOLESKY -+include_HEADERS += cholmod_cholesky.h ++pkginclude_HEADERS += cholmod_cholesky.h +endif + +if MOD_PARTITION -+include_HEADERS += cholmod_partition.h ++pkginclude_HEADERS += cholmod_partition.h +endif + +if MOD_MATRIXOPS -+include_HEADERS += cholmod_matrixops.h ++pkginclude_HEADERS += cholmod_matrixops.h +endif + +if MOD_MODIFY -+include_HEADERS += cholmod_modify.h ++pkginclude_HEADERS += cholmod_modify.h +endif + +if MOD_SUPERNODAL -+include_HEADERS += cholmod_supernodal.h ++pkginclude_HEADERS += cholmod_supernodal.h +endif diff --git a/Include/cholmod_config.h b/Include/cholmod_config.h.in rename from Include/cholmod_config.h @@ -514,15 +516,18 @@ diff --git a/Makefile.am b/Makefile.am new file mode 100644 --- /dev/null +++ b/Makefile.am -@@ -0,0 +1,40 @@ +@@ -0,0 +1,43 @@ +SUBDIRS = Include Core +EXTRA_DIST = README.txt + ++pkgconfigdir = $(libdir)/pkgconfig ++pkgconfig_DATA = cholmod.pc ++ +lib_LTLIBRARIES = libcholmod.la + +libcholmod_la_SOURCES = +libcholmod_la_LIBADD = $(top_builddir)/Core/libcore.la -+libcholmod_la_LDFLAGS = -no-undefined -version-info 8:1:7 ++libcholmod_la_LDFLAGS = -no-undefined -version-info 8:3:7 + +if MOD_CHECK +SUBDIRS += Check @@ -560,7 +565,7 @@ new file mode 100644 --- /dev/null +++ b/MatrixOps/Makefile.am @@ -0,0 +1,35 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -600,7 +605,7 @@ new file mode 100644 --- /dev/null +++ b/Modify/Makefile.am @@ -0,0 +1,30 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -635,7 +640,7 @@ new file mode 100644 --- /dev/null +++ b/Partition/Makefile.am @@ -0,0 +1,28 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS) ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -654,11 +659,11 @@ new file mode 100644 + libpartition.la + +libpartitioni_la_SOURCES = $(PARTITIONSRC) -+libpartitioni_la_LIBADD = $(METIS_LIBS) -lccolamd -lcamd -lm ++libpartitioni_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm +libpartitioni_la_CPPFLAGS = $(AM_CPPFLAGS) + +libpartitionl_la_SOURCES = $(PARTITIONSRC) -+libpartitionl_la_LIBADD = $(METIS_LIBS) -lccolamd -lcamd -lm ++libpartitionl_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm +libpartitionl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG + +libpartition_la_SOURCES = @@ -668,7 +673,7 @@ new file mode 100644 --- /dev/null +++ b/Supernodal/Makefile.am @@ -0,0 +1,30 @@ -+AM_CPPFLAGS = -I$(top_srcdir)/Include ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS) + +EXTRA_DIST = \ + License.txt \ @@ -1032,13 +1037,30 @@ new file mode 100644 + $2 +fi +])dnl ACX_LAPACK +diff --git a/cholmod.pc.in b/cholmod.pc.in +new file mode 100644 +--- /dev/null ++++ b/cholmod.pc.in +@@ -0,0 +1,12 @@ ++prefix=@prefix@ ++exec_prefix=@exec_prefix@ ++libdir=@libdir@ ++includedir=@includedir@ ++ ++Name: @PACKAGE_NAME@ ++Description: Sparse Cholesky factorization ++Version: @PACKAGE_VERSION@ ++Requires.private: @CHOLMOD_REQUIRES@ ++Libs: -L${libdir} -lcholmod ++Libs.private: @LAPACK_LIBS@ @BLAS_LIBS@ -lm ++Cflags: -I${includedir}/cholmod diff --git a/configure.ac b/configure.ac new file mode 100644 --- /dev/null +++ b/configure.ac -@@ -0,0 +1,179 @@ -+AC_PREREQ([2.65]) -+AC_INIT([CHOLMOD], [1.7.1], [davis@cise.ufl.edu]) +@@ -0,0 +1,177 @@ ++AC_PREREQ([2.68]) ++AC_INIT([CHOLMOD],[1.7.3],[davis@cise.ufl.edu]) +AC_CONFIG_SRCDIR([Core/cholmod_common.c]) +AC_CONFIG_HEADER([config.h]) +AM_INIT_AUTOMAKE([foreign]) @@ -1136,38 +1158,36 @@ new file mode 100644 + +AC_CHECK_LIB([m], [sqrt]) + ++AC_CHECK_HEADERS([stddef.h stdlib.h string.h]) ++ ++PKG_PROG_PKG_CONFIG ++PKG_CHECK_MODULES([UFCONFIG],[ufconfig], ++ [], ++ [AC_MSG_ERROR([cannot find ufconfig])]) ++CHOLMOD_REQUIRES="ufconfig" ++ +if test "x$mod_cholesky" = "xyes"; then -+ AC_CHECK_HEADERS([amd.h]) -+ AC_CHECK_LIB([amd], [amd_info], -+ [], -+ [AC_MSG_ERROR([cannot find libamd (required by mod-cholesky)])]) -+ -+ AC_CHECK_HEADERS([colamd.h]) -+ AC_CHECK_LIB([colamd], [colamd_recommended], -+ [], -+ [AC_MSG_ERROR([cannot find libcolamd (required by mod-cholesky)])]) ++ PKG_CHECK_MODULES([AMD],[amd], ++ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES amd"], ++ [AC_MSG_ERROR([cannot find amd (required by mod-cholesky)])]) ++ ++ PKG_CHECK_MODULES([COLAMD],[colamd], ++ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES colamd"], ++ [AC_MSG_ERROR([cannot find colamd (required by mod-cholesky)])]) +fi + +if test "x$mod_partition" = "xyes"; then -+ PKG_PROG_PKG_CONFIG -+ if test -n "$PKG_CONFIG"; then -+ PKG_CHECK_MODULES([METIS], [metis]) -+ else -+ AC_CHECK_HEADERS([metis.h]) -+ AC_CHECK_LIB([metis], [METIS_NodeND], -+ [METIS_LIBS=-lmetis], -+ [AC_MSG_ERROR([cannot find libmetis (required by mod-partition)])]) -+ fi ++ PKG_CHECK_MODULES([METIS],[metis], ++ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES metis"], ++ [AC_MSG_ERROR([cannot find metis (required by mod-partition)])]) + -+ AC_CHECK_HEADERS([ccolamd.h]) -+ AC_CHECK_LIB([ccolamd], [ccolamd_report], -+ [], -+ [AC_MSG_ERROR([cannot find libccolamd (required by mod-partition)])]) ++PKG_CHECK_MODULES([CAMD],[camd], ++ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES camd"], ++ [AC_MSG_ERROR([cannot find camd (required by mod-partition)])]) + -+ AC_CHECK_HEADERS([camd.h]) -+ AC_CHECK_LIB([camd], [camd_info], -+ [], -+ [AC_MSG_ERROR([cannot find libcamd (required by mod-partition)])]) ++PKG_CHECK_MODULES([CCOLAMD],[ccolamd], ++ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES ccolamd"], ++ [AC_MSG_ERROR([cannot find ccolamd (required by mod-partition)])]) +fi + +if test "x$mod_supernodal" = "xyes"; then @@ -1184,9 +1204,6 @@ new file mode 100644 + fi +fi + -+AC_CHECK_HEADERS([stddef.h stdlib.h string.h]) -+AC_CHECK_HEADERS([UFconfig.h]) -+ +AC_TYPE_SIZE_T + +AC_FUNC_MALLOC @@ -1201,7 +1218,10 @@ new file mode 100644 +AM_CONDITIONAL([MOD_MODIFY], [test "x$mod_modify" = "xyes"]) +AM_CONDITIONAL([MOD_SUPERNODAL], [test "x$mod_supernodal" = "xyes"]) + ++AC_SUBST([CHOLMOD_REQUIRES]) ++ +AC_CONFIG_FILES([ ++ cholmod.pc + Makefile + Check/Makefile + Cholesky/Makefile diff --git a/libraries/CHOLMOD/slack-desc b/libraries/CHOLMOD/slack-desc index cf68da832a5b..b3085d5f65cd 100644 --- a/libraries/CHOLMOD/slack-desc +++ b/libraries/CHOLMOD/slack-desc @@ -6,7 +6,7 @@ # customary to leave one space after the ':'. |-----handy-ruler------------------------------------------------------| -CHOLMOD: CHOLMOD (sparse matrix factorizing routines) +CHOLMOD: CHOLMOD (sparse matrix factoring routines) CHOLMOD: CHOLMOD: CHOLMOD is a set of ANSI C routines for sparse Cholesky CHOLMOD: factorization and update/downdate. |