diff options
| -rw-r--r-- | academic/paml/paml.SlackBuild | 10 | ||||
| -rw-r--r-- | academic/paml/paml.info | 8 | ||||
| -rw-r--r-- | academic/paml/slack-desc | 2 |
3 files changed, 11 insertions, 9 deletions
diff --git a/academic/paml/paml.SlackBuild b/academic/paml/paml.SlackBuild index ab866fd536028..c0c62ef3e253b 100644 --- a/academic/paml/paml.SlackBuild +++ b/academic/paml/paml.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for paml -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=paml -VERSION=${VERSION:-4.7a} +VERSION=${VERSION:-4.8} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -92,7 +92,7 @@ install -D -m755 yn00 $PKG/usr/bin/yn00 cc $SLKCFLAGS -DCodonNSbranches -o evolverNSbranches evolver.c tools.c -lm cc $SLKCFLAGS -DCodonNSsites -o evolverNSsites evolver.c tools.c -lm cc $SLKCFLAGS -DCodonNSbranchsites -o evolverNSbranchsites evolver.c tools.c -lm - + install -D -m755 evolverNSbranches $PKG/usr/libexec/$PRGNAM/evolverNSbranches install -D -m755 evolverNSbranchsites $PKG/usr/libexec/$PRGNAM/evolverNSbranchsites install -D -m755 evolverNSsites $PKG/usr/libexec/$PRGNAM/evolverNSsites @@ -140,10 +140,10 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - README.txt GeneticCode.txt doc/* src/README-compiling.txt \ +cp -a README.txt GeneticCode.txt doc/* src/README-compiling.txt \ Technical/{Pt/eigenQREV.pdf,Simulation/{multiruns.txt,Codon/README-codon.txt}}\ $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/MCMCtree.Tutorials.pdf > $PKG/usr/doc/$PRGNAM-$VERSION/MCMCtree.Tutorial.pdf cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/LICENSE > $PKG/usr/doc/$PRGNAM-$VERSION/LICENSE diff --git a/academic/paml/paml.info b/academic/paml/paml.info index 653abc36094c9..8ec325e6d5630 100644 --- a/academic/paml/paml.info +++ b/academic/paml/paml.info @@ -1,8 +1,10 @@ PRGNAM="paml" -VERSION="4.7a" +VERSION="4.8" HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" -DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.7a.tgz" -MD5SUM="59b330e6ba15b1e79a02ff3817b96346" +DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8.tgz \ + http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf" +MD5SUM="927b69551068e044bad2a0e133d8ace7 \ + 29c851d887eea56b949c01ab42cc48fb" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" diff --git a/academic/paml/slack-desc b/academic/paml/slack-desc index 86ae56d94fddf..3d3aeb22d8936 100644 --- a/academic/paml/slack-desc +++ b/academic/paml/slack-desc @@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP, paml: MOLPHY, PhyML, RaxML, etc. paml: paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html -paml: References: /usr/doc/paml-4.7a/References +paml: References: /usr/doc/paml-4.8/References |