misc/bodr: Added (Blue Obelisk Data Repository)

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

4 files changed, 139 insertions, 0 deletions

diff --git a/misc/bodr/README b/misc/bodr/README
new file mode 100644
index 000000000000..5b2994c5fef3
--- /dev/null
+++ b/misc/bodr/README
@@ -0,0 +1,19 @@
+BODR is the "Blue Obelisk Data Repository".
+
+It represents a set of common, standardized data for chemoinformatics
+in both XML and plain-text formats. Currently this encompasses:
+
+1) Elements directory
+   - element names and symbols
+   - atomic masses, covalent radii, van der Waals radii
+   - Pauling electronegativities
+   - electron affinity
+   - ionization potential
+   - default element colors for viewers
+2) Isotopes directory
+   - exact masses of most abundant isotopes
+   - isotopic masses and abundances
+   - spin
+   - kinds of decay, percentages and energy
+   - magnetic dipole moment
+   - halflife
diff --git a/misc/bodr/bodr.SlackBuild b/misc/bodr/bodr.SlackBuild
new file mode 100644
index 000000000000..db9c45ef0d4b
--- /dev/null
+++ b/misc/bodr/bodr.SlackBuild
@@ -0,0 +1,91 @@
+#!/bin/sh
+
+# Slackware build script for bodr
+
+# Copyright 2011  Petar Petrov, ppetrov@paju.oulu.fi
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=bodr			
+VERSION=${VERSION:-9}	
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}		
+
+ARCH=noarch
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}	
+
+if [ "$ARCH" = "i486" ]; then
+  SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+  SLKCFLAGS="-O2 -fPIC"
+  LIBDIRSUFFIX="64"
+else
+  SLKCFLAGS="-O2"
+  LIBDIRSUFFIX=""
+fi
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-$VERSION
+tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
+cd $PRGNAM-$VERSION
+chown -R root:root .
+find . \
+ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
+ -exec chmod 644 {} \;
+
+CFLAGS="$SLKCFLAGS" \
+CXXFLAGS="$SLKCFLAGS" \
+./configure \
+  --prefix=/usr \
+  --sysconfdir=/etc \
+  --localstatedir=/var \
+  --mandir=/usr/man \
+  --docdir=/usr/doc/$PRGNAM-$VERSION
+  
+make
+make DESTDIR=$PKG install
+
+find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
+  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a \
+  AUTHORS ChangeLog COPYING INSTALL NEWS README THANKS TODO \
+  $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/misc/bodr/bodr.info b/misc/bodr/bodr.info
new file mode 100644
index 000000000000..8ee08807f090
--- /dev/null
+++ b/misc/bodr/bodr.info
@@ -0,0 +1,10 @@
+PRGNAM="bodr"
+VERSION="9"
+HOMEPAGE="http://sourceforge.net/projects/bodr/"
+DOWNLOAD="http://sourceforge.net/projects/bodr/files/bodr/9/bodr-9.tar.gz"
+MD5SUM="eb69a3b1676f66757f707ffdc84d95a2"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+MAINTAINER="Petar Petrov"
+EMAIL="ppetrov@paju.oulu.fi"
+APPROVED="rworkman"
diff --git a/misc/bodr/slack-desc b/misc/bodr/slack-desc
new file mode 100644
index 000000000000..e4267d59401d
--- /dev/null
+++ b/misc/bodr/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.  Line
+# up the first '|' above the ':' following the base package name, and the '|'
+# on the right side marks the last column you can put a character in.  You must
+# make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+    |-----handy-ruler------------------------------------------------------|
+bodr: bodr (Blue Obelisk Data Repository)
+bodr:
+bodr: BODR represents a set of common, standardized data for 
+bodr: chemoinformatics in both XML and plain-text formats.
+bodr:
+bodr:
+bodr:
+bodr:
+bodr:
+bodr:
+bodr:
\ No newline at end of file