libraries/CHOLMOD: Updated for version 1.7.3.

Signed-off-by: dsomero <xgizzmo@slackbuilds.org>

4 files changed, 87 insertions, 61 deletions

diff --git a/libraries/CHOLMOD/CHOLMOD.SlackBuild b/libraries/CHOLMOD/CHOLMOD.SlackBuild
index 180c5ae010112..58cae4c9e8d64 100644
--- a/libraries/CHOLMOD/CHOLMOD.SlackBuild
+++ b/libraries/CHOLMOD/CHOLMOD.SlackBuild
@@ -4,7 +4,7 @@
 # Written by Kyle Guinn <elyk03@gmail.com>
 
 PRGNAM=CHOLMOD
-VERSION=${VERSION:-1.7.1}
+VERSION=${VERSION:-1.7.3}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
@@ -38,6 +38,9 @@ else
   LIBDIRSUFFIX=""
 fi
 
+# Recommended by SuiteSparse
+SLKCFLAGS="$SLKCFLAGS -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE"
+
 set -e
 
 rm -rf $PKG
@@ -57,14 +60,17 @@ fi
 autoreconf -vif
 
 CFLAGS="$SLKCFLAGS" \
-CXXFLAGS="$SLKCFLAGS" \
+FFLAGS="$SLKCFLAGS" \
 ./configure \
   --prefix=/usr \
   --libdir=/usr/lib${LIBDIRSUFFIX} \
   --sysconfdir=/etc \
   --localstatedir=/var \
   --mandir=/usr/man \
+  --infodir=/usr/info \
   --docdir=/usr/doc/$PRGNAM-$VERSION \
+  --enable-shared \
+  --disable-static \
   --build=$ARCH-slackware-linux
 
 make
diff --git a/libraries/CHOLMOD/CHOLMOD.info b/libraries/CHOLMOD/CHOLMOD.info
index 0150502295d6c..03f413b3aaa6e 100644
--- a/libraries/CHOLMOD/CHOLMOD.info
+++ b/libraries/CHOLMOD/CHOLMOD.info
@@ -1,8 +1,8 @@
 PRGNAM="CHOLMOD"
-VERSION="1.7.1"
+VERSION="1.7.3"
 HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod/"
-DOWNLOAD="http://www.cise.ufl.edu/research/sparse/cholmod/CHOLMOD-1.7.1.tar.gz"
-MD5SUM="9032c5724bee43ccd8f4546338a29fac"
+DOWNLOAD="http://www.cise.ufl.edu/research/sparse/cholmod/CHOLMOD-1.7.3.tar.gz"
+MD5SUM="e3bcfeefe40a2f3ef712e1bd3ec36781"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 MAINTAINER="Kyle Guinn"
diff --git a/libraries/CHOLMOD/autotoolize.diff b/libraries/CHOLMOD/autotoolize.diff
index e35f84125ec2a..3bb7f6c8ebadd 100644
--- a/libraries/CHOLMOD/autotoolize.diff
+++ b/libraries/CHOLMOD/autotoolize.diff
@@ -3,7 +3,7 @@ new file mode 100644
 --- /dev/null
 +++ b/Check/Makefile.am
 @@ -0,0 +1,24 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -32,7 +32,7 @@ new file mode 100644
 --- /dev/null
 +++ b/Cholesky/Makefile.am
 @@ -0,0 +1,41 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -64,11 +64,11 @@ new file mode 100644
 +	libcholesky.la
 +
 +libcholeskyi_la_SOURCES = $(CHOLESKYSRC)
-+libcholeskyi_la_LIBADD = -lcolamd -lamd -lm
++libcholeskyi_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm
 +libcholeskyi_la_CPPFLAGS = $(AM_CPPFLAGS)
 +
 +libcholeskyl_la_SOURCES = $(CHOLESKYSRC)
-+libcholeskyl_la_LIBADD = -lcolamd -lamd -lm
++libcholeskyl_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm
 +libcholeskyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
 +
 +libcholesky_la_SOURCES =
@@ -78,7 +78,7 @@ new file mode 100644
 --- /dev/null
 +++ b/Core/Makefile.am
 @@ -0,0 +1,43 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -126,7 +126,7 @@ new file mode 100644
 --- /dev/null
 +++ b/Demo/Makefile.am
 @@ -0,0 +1,51 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -421,16 +421,18 @@ diff --git a/Include/Makefile.am b/Include/Makefile.am
 new file mode 100644
 --- /dev/null
 +++ b/Include/Makefile.am
-@@ -0,0 +1,40 @@
+@@ -0,0 +1,42 @@
 +EXTRA_DIST = \
 +	License.txt \
 +	README.txt
 +
++pkgincludedir = $(includedir)/cholmod
++
 +# Automatically generated headers
-+nodist_include_HEADERS = \
++nodist_pkginclude_HEADERS = \
 +	cholmod_config.h
 +
-+include_HEADERS = \
++pkginclude_HEADERS = \
 +	cholmod.h \
 +	cholmod_blas.h \
 +	cholmod_complexity.h \
@@ -440,27 +442,27 @@ new file mode 100644
 +	cholmod_template.h
 +
 +if MOD_CHECK
-+include_HEADERS += cholmod_check.h
++pkginclude_HEADERS += cholmod_check.h
 +endif
 +
 +if MOD_CHOLESKY
-+include_HEADERS += cholmod_cholesky.h
++pkginclude_HEADERS += cholmod_cholesky.h
 +endif
 +
 +if MOD_PARTITION
-+include_HEADERS += cholmod_partition.h
++pkginclude_HEADERS += cholmod_partition.h
 +endif
 +
 +if MOD_MATRIXOPS
-+include_HEADERS += cholmod_matrixops.h
++pkginclude_HEADERS += cholmod_matrixops.h
 +endif
 +
 +if MOD_MODIFY
-+include_HEADERS += cholmod_modify.h
++pkginclude_HEADERS += cholmod_modify.h
 +endif
 +
 +if MOD_SUPERNODAL
-+include_HEADERS += cholmod_supernodal.h
++pkginclude_HEADERS += cholmod_supernodal.h
 +endif
 diff --git a/Include/cholmod_config.h b/Include/cholmod_config.h.in
 rename from Include/cholmod_config.h
@@ -514,15 +516,18 @@ diff --git a/Makefile.am b/Makefile.am
 new file mode 100644
 --- /dev/null
 +++ b/Makefile.am
-@@ -0,0 +1,40 @@
+@@ -0,0 +1,43 @@
 +SUBDIRS = Include Core
 +EXTRA_DIST = README.txt
 +
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = cholmod.pc
++
 +lib_LTLIBRARIES = libcholmod.la
 +
 +libcholmod_la_SOURCES =
 +libcholmod_la_LIBADD = $(top_builddir)/Core/libcore.la
-+libcholmod_la_LDFLAGS = -no-undefined -version-info 8:1:7
++libcholmod_la_LDFLAGS = -no-undefined -version-info 8:3:7
 +
 +if MOD_CHECK
 +SUBDIRS += Check
@@ -560,7 +565,7 @@ new file mode 100644
 --- /dev/null
 +++ b/MatrixOps/Makefile.am
 @@ -0,0 +1,35 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -600,7 +605,7 @@ new file mode 100644
 --- /dev/null
 +++ b/Modify/Makefile.am
 @@ -0,0 +1,30 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -635,7 +640,7 @@ new file mode 100644
 --- /dev/null
 +++ b/Partition/Makefile.am
 @@ -0,0 +1,28 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS)
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -654,11 +659,11 @@ new file mode 100644
 +	libpartition.la
 +
 +libpartitioni_la_SOURCES = $(PARTITIONSRC)
-+libpartitioni_la_LIBADD = $(METIS_LIBS) -lccolamd -lcamd -lm
++libpartitioni_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm
 +libpartitioni_la_CPPFLAGS = $(AM_CPPFLAGS)
 +
 +libpartitionl_la_SOURCES = $(PARTITIONSRC)
-+libpartitionl_la_LIBADD = $(METIS_LIBS) -lccolamd -lcamd -lm
++libpartitionl_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm
 +libpartitionl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
 +
 +libpartition_la_SOURCES =
@@ -668,7 +673,7 @@ new file mode 100644
 --- /dev/null
 +++ b/Supernodal/Makefile.am
 @@ -0,0 +1,30 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
 +
 +EXTRA_DIST = \
 +	License.txt \
@@ -1032,13 +1037,30 @@ new file mode 100644
 +        $2
 +fi
 +])dnl ACX_LAPACK
+diff --git a/cholmod.pc.in b/cholmod.pc.in
+new file mode 100644
+--- /dev/null
++++ b/cholmod.pc.in
+@@ -0,0 +1,12 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: @PACKAGE_NAME@
++Description: Sparse Cholesky factorization
++Version: @PACKAGE_VERSION@
++Requires.private: @CHOLMOD_REQUIRES@
++Libs: -L${libdir} -lcholmod
++Libs.private: @LAPACK_LIBS@ @BLAS_LIBS@ -lm
++Cflags: -I${includedir}/cholmod
 diff --git a/configure.ac b/configure.ac
 new file mode 100644
 --- /dev/null
 +++ b/configure.ac
-@@ -0,0 +1,179 @@
-+AC_PREREQ([2.65])
-+AC_INIT([CHOLMOD], [1.7.1], [davis@cise.ufl.edu])
+@@ -0,0 +1,177 @@
++AC_PREREQ([2.68])
++AC_INIT([CHOLMOD],[1.7.3],[davis@cise.ufl.edu])
 +AC_CONFIG_SRCDIR([Core/cholmod_common.c])
 +AC_CONFIG_HEADER([config.h])
 +AM_INIT_AUTOMAKE([foreign])
@@ -1136,38 +1158,36 @@ new file mode 100644
 +
 +AC_CHECK_LIB([m], [sqrt])
 +
++AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
++
++PKG_PROG_PKG_CONFIG
++PKG_CHECK_MODULES([UFCONFIG],[ufconfig],
++	[],
++	[AC_MSG_ERROR([cannot find ufconfig])])
++CHOLMOD_REQUIRES="ufconfig"
++
 +if test "x$mod_cholesky" = "xyes"; then
-+	AC_CHECK_HEADERS([amd.h])
-+	AC_CHECK_LIB([amd], [amd_info],
-+		[],
-+		[AC_MSG_ERROR([cannot find libamd (required by mod-cholesky)])])
-+	
-+	AC_CHECK_HEADERS([colamd.h])
-+	AC_CHECK_LIB([colamd], [colamd_recommended],
-+		[],
-+		[AC_MSG_ERROR([cannot find libcolamd (required by mod-cholesky)])])
++	PKG_CHECK_MODULES([AMD],[amd],
++		[CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES amd"],
++		[AC_MSG_ERROR([cannot find amd (required by mod-cholesky)])])
++
++	PKG_CHECK_MODULES([COLAMD],[colamd],
++		[CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES colamd"],
++		[AC_MSG_ERROR([cannot find colamd (required by mod-cholesky)])])
 +fi
 +
 +if test "x$mod_partition" = "xyes"; then
-+	PKG_PROG_PKG_CONFIG
-+	if test -n "$PKG_CONFIG"; then
-+		PKG_CHECK_MODULES([METIS], [metis])
-+	else
-+		AC_CHECK_HEADERS([metis.h])
-+		AC_CHECK_LIB([metis], [METIS_NodeND],
-+			[METIS_LIBS=-lmetis],
-+			[AC_MSG_ERROR([cannot find libmetis (required by mod-partition)])])
-+	fi
++	PKG_CHECK_MODULES([METIS],[metis],
++		[CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES metis"],
++		[AC_MSG_ERROR([cannot find metis (required by mod-partition)])])
 +
-+	AC_CHECK_HEADERS([ccolamd.h])
-+	AC_CHECK_LIB([ccolamd], [ccolamd_report],
-+		[],
-+		[AC_MSG_ERROR([cannot find libccolamd (required by mod-partition)])])
++PKG_CHECK_MODULES([CAMD],[camd],
++		[CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES camd"],
++		[AC_MSG_ERROR([cannot find camd (required by mod-partition)])])
 +
-+	AC_CHECK_HEADERS([camd.h])
-+	AC_CHECK_LIB([camd], [camd_info],
-+		[],
-+		[AC_MSG_ERROR([cannot find libcamd (required by mod-partition)])])
++PKG_CHECK_MODULES([CCOLAMD],[ccolamd],
++		[CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES ccolamd"],
++		[AC_MSG_ERROR([cannot find ccolamd (required by mod-partition)])])
 +fi
 +
 +if test "x$mod_supernodal" = "xyes"; then
@@ -1184,9 +1204,6 @@ new file mode 100644
 +	fi
 +fi
 +
-+AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
-+AC_CHECK_HEADERS([UFconfig.h])
-+
 +AC_TYPE_SIZE_T
 +
 +AC_FUNC_MALLOC
@@ -1201,7 +1218,10 @@ new file mode 100644
 +AM_CONDITIONAL([MOD_MODIFY], [test "x$mod_modify" = "xyes"])
 +AM_CONDITIONAL([MOD_SUPERNODAL], [test "x$mod_supernodal" = "xyes"])
 +
++AC_SUBST([CHOLMOD_REQUIRES])
++
 +AC_CONFIG_FILES([
++	cholmod.pc
 +	Makefile
 +	Check/Makefile
 +	Cholesky/Makefile
diff --git a/libraries/CHOLMOD/slack-desc b/libraries/CHOLMOD/slack-desc
index cf68da832a5bb..b3085d5f65cd6 100644
--- a/libraries/CHOLMOD/slack-desc
+++ b/libraries/CHOLMOD/slack-desc
@@ -6,7 +6,7 @@
 # customary to leave one space after the ':'.
 
        |-----handy-ruler------------------------------------------------------|
-CHOLMOD: CHOLMOD (sparse matrix factorizing routines)
+CHOLMOD: CHOLMOD (sparse matrix factoring routines)
 CHOLMOD:
 CHOLMOD: CHOLMOD is a set of ANSI C routines for sparse Cholesky
 CHOLMOD: factorization and update/downdate.