diff options
| author | brobr <sborg63@disroot.org> | 2023-10-09 22:15:38 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2023-10-10 06:34:40 +0700 |
| commit | 95fcd358259b3b2f7c692aa5ee12a0f7f88d01b0 (patch) | |
| tree | 372c40d6daf288d11501ed58557d02334741712d /academic | |
| parent | 8720e4de63342daaf92d5d8f48b7f32ae04c1355 (diff) | |
academic/ViennaRNA: upgrade to version 2.6.4; edit README
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/ViennaRNA/README | 19 | ||||
| -rw-r--r-- | academic/ViennaRNA/ViennaRNA.SlackBuild | 7 | ||||
| -rw-r--r-- | academic/ViennaRNA/ViennaRNA.info | 6 |
3 files changed, 8 insertions, 24 deletions
diff --git a/academic/ViennaRNA/README b/academic/ViennaRNA/README index 69c7211233e75..4807f340a858f 100644 --- a/academic/ViennaRNA/README +++ b/academic/ViennaRNA/README @@ -39,24 +39,9 @@ Amongst other things, the ViennRNA implementations allow you to: - compare two secondary structures - predict hybridization structures of two RNA molecules -The package includes `Perl 5` and `Python 3` modules that give access +The package includes `Perl` and `Python 3` modules that give access to almost all functions of the C library from within the respective -scripting languages. For this reason, python3 is a dependency - -The `Python 2` module can be built as well, or instead of the one -for `Python 3`; just edit the SlackBuild or run it by setting build -options PYTHON=yes PYTHON3=no. (e.g. in sbopkg or run it from -the commandline -within the directory containing the SlackBuild -script and downloaded source archive- as: `PYTHON=yes PYTHON3=no -./ViennaRNA.SlackBuild`) - -There is also a set of programs for analyzing sequence and distance -data using split decomposition, statistical geometry, and cluster -methods. They are not maintained any more and not built by default. - -The code very rarely uses static arrays, and all programs should work -for sequences up to a length of 32,700 (if you have huge amounts of -memory that is). +scripting languages. For further/most recent info see: diff --git a/academic/ViennaRNA/ViennaRNA.SlackBuild b/academic/ViennaRNA/ViennaRNA.SlackBuild index 1dea452cba994..42ae76bbd7430 100644 --- a/academic/ViennaRNA/ViennaRNA.SlackBuild +++ b/academic/ViennaRNA/ViennaRNA.SlackBuild @@ -25,8 +25,8 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=ViennaRNA -VERSION=${VERSION:-2.6.3} -BUILD=${BUILD:-2} +VERSION=${VERSION:-2.6.4} +BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -95,8 +95,7 @@ find -L . \ # - RNAlocmin # - Swig (all scripting interfaces) # - Perl interface -# - Python interface -# - Python 3 interface +# - Python 3 interface (= Python interface) # - Streaming SIMD Extension support # in the case of run time/ make/ or configure problems try turning off: # - Link Time Optimization (LTO) diff --git a/academic/ViennaRNA/ViennaRNA.info b/academic/ViennaRNA/ViennaRNA.info index 2c05f2df00899..b871a31ccc0cb 100644 --- a/academic/ViennaRNA/ViennaRNA.info +++ b/academic/ViennaRNA/ViennaRNA.info @@ -1,10 +1,10 @@ PRGNAM="ViennaRNA" -VERSION="2.6.3" +VERSION="2.6.4" HOMEPAGE="https://www.tbi.univie.ac.at/RNA" DOWNLOAD="UNSUPPORTED" MD5SUM="" -DOWNLOAD_x86_64="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ViennaRNA-2.6.3.tar.gz" -MD5SUM_x86_64="405b8126efc1dd8f52bfc984d9171c9e" +DOWNLOAD_x86_64="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ViennaRNA-2.6.4.tar.gz" +MD5SUM_x86_64="6d8fd8ffe44d70399bff220f709a2b55" REQUIRES="lapacke" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |