diff options
| author | brobr <sborg63@disroot.org> | 2023-09-18 10:14:47 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2023-09-23 08:31:13 +0700 |
| commit | a0ff8419525c6d6d6c8dc2a3fea8315ba7e5430f (patch) | |
| tree | bceff549c4942d89404f96fea9118156778d692b /academic | |
| parent | 1ef6d04a616e7390a7afcd229c168ca82500cb4a (diff) | |
academic/ViennaRNA: Upgrade to version 2.6.3
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/ViennaRNA/ViennaRNA.SlackBuild | 12 | ||||
| -rw-r--r-- | academic/ViennaRNA/ViennaRNA.info | 10 |
2 files changed, 13 insertions, 9 deletions
diff --git a/academic/ViennaRNA/ViennaRNA.SlackBuild b/academic/ViennaRNA/ViennaRNA.SlackBuild index edd9fe0e157a3..b7d0dfc94f102 100644 --- a/academic/ViennaRNA/ViennaRNA.SlackBuild +++ b/academic/ViennaRNA/ViennaRNA.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ViennaRNA -# Copyright 2018-2022 Rob van Nues +# Copyright 2018-2023 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=ViennaRNA -VERSION=${VERSION:-2.5.1} +VERSION=${VERSION:-2.6.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -101,7 +101,10 @@ find -L . \ # for Z-score filtering via statically linked libsvm: # - SVM Z-score filter in RNALfold # - GNU Scientific Library for RNApvmin - +# RNAxplorer blocks configuration despite intalling dependencies lapacke and lapack, so ignore it +# https://github.com/ViennaRNA/ViennaRNA/issues/206 +rnaxplorer="" ; [ "${RNAXPLORER:-no}" != "yes" ] && rnaxplorer="--without-rnaxplorer" +# everything else is enabled cluster="" ; [ "${CLUSTER:-yes}" != "no" ] && cluster="--with-cluster" kinwalker="" ; [ "${KINWALKER:-yes}" != "no" ] && kinwalker="--with-kinwalker" # Default enabled features: @@ -130,6 +133,7 @@ CXXFLAGS="$SLKCFLAGS" \ --build=$ARCH-slackware-linux \ --with-python2=no \ --with-doc=no \ + $rnaxplorer \ $cluster \ $kinwalker \ $forester \ @@ -169,7 +173,7 @@ rm -r $PKG/usr/share/ViennaRNA/bin # re-organise info files the Slackware/SBo way mkdir $PKG/usr/info/ -rm -rf $PKG/usr/share/info/dir +rm $PKG/usr/share/info/dir #gzip and move info file gzip -9 $PKG/usr/share/info/*.info mv $PKG/usr/share/info/*.info* $PKG/usr/info/ diff --git a/academic/ViennaRNA/ViennaRNA.info b/academic/ViennaRNA/ViennaRNA.info index eeb3430e3b57b..c3292c1a047cf 100644 --- a/academic/ViennaRNA/ViennaRNA.info +++ b/academic/ViennaRNA/ViennaRNA.info @@ -1,10 +1,10 @@ PRGNAM="ViennaRNA" -VERSION="2.5.1" +VERSION="2.6.3" HOMEPAGE="https://www.tbi.univie.ac.at/RNA" -DOWNLOAD="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_5_x/ViennaRNA-2.5.1.tar.gz" -MD5SUM="25abee6dc24b863e50d44b154357b9c7" -DOWNLOAD_x86_64="" -MD5SUM_x86_64="" +DOWNLOAD="UNSUPPORTED" +MD5SUM="" +DOWNLOAD_x86_64="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ViennaRNA-2.6.3.tar.gz" +MD5SUM_x86_64="405b8126efc1dd8f52bfc984d9171c9e" REQUIRES="" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |