diff options
| author | brobr <sborg63@disroot.org> | 2022-11-22 14:01:50 +0000 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2022-11-24 22:15:19 +0700 |
| commit | 71528d865b3389c2929a383be97253d7e58a6657 (patch) | |
| tree | a921e1db1aa08971583203a939a87e63a9a9c383 /academic | |
| parent | 1cd72da7b003f48e466601a7491513ad1ee7377d (diff) | |
academic/pysam: upgraded to version 0.20.0
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 9 | ||||
| -rw-r--r-- | academic/pysam/pysam.info | 6 |
2 files changed, 9 insertions, 6 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index d277a692b21ad..2e69a15150dd8 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -25,8 +25,8 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam -VERSION=${VERSION:-0.19.1} -BUILD=${BUILD:-2} +VERSION=${VERSION:-0.20.0} +BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,7 +80,10 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# pysam linked to htslib-1.15.1; SBo-htslib is at 1.16 +# pysam now at htslib-1.16; SBo-htslib is at 1.16: +# can use system htslib: +export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +export HTSLIB_INCLUDE_DIR=/usr/include #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info index 719ee24f2d2ea..75735bb31aea5 100644 --- a/academic/pysam/pysam.info +++ b/academic/pysam/pysam.info @@ -1,8 +1,8 @@ PRGNAM="pysam" -VERSION="0.19.1" +VERSION="0.20.0" HOMEPAGE="https://github.com/pysam-developers/pysam" -DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.19.1.tar.gz" -MD5SUM="8e37b3f725259f08a33785317ccbc019" +DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.20.0.tar.gz" +MD5SUM="765653d9a606fb992670803d2633becb" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" |