diff options
| author | brobr <sborg63@disroot.org> | 2024-04-29 23:03:11 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2024-05-04 21:45:02 +0700 |
| commit | 384c360ffee0e55ffeb7c92e975ac7343c1dec55 (patch) | |
| tree | a1e58991b6bac4fdcb6f578dcb56cb343af61887 /academic | |
| parent | fb25db28bfd9cd8fc6361f644f80f7e1b66bba28 (diff) | |
academic/samtools:Upgrade to 1.20
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/samtools/samtools.SlackBuild | 12 | ||||
| -rw-r--r-- | academic/samtools/samtools.info | 6 |
2 files changed, 8 insertions, 10 deletions
diff --git a/academic/samtools/samtools.SlackBuild b/academic/samtools/samtools.SlackBuild index 7efbaf3288ca..4f39dce0d077 100644 --- a/academic/samtools/samtools.SlackBuild +++ b/academic/samtools/samtools.SlackBuild @@ -25,14 +25,14 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=samtools -VERSION=${VERSION:-1.19.2} -HTSLIBV=${HTSLIBV:-1.19.1} +VERSION=${VERSION:-1.20} +HTSLIBV=${HTSLIBV:-1.20} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} -# Some applications still rely on the legacy samtools API instead of using htslib -# exclusively, in that case, install the headers in /usr/include/bam and the static +# Some applications still rely on the legacy samtools API instead of using htslib +# exclusively, in that case, install the headers in /usr/include/bam and the static # libbam library as well by declaring (uncommenting): #SAMLIB="yes" # and commenting out: @@ -122,9 +122,7 @@ find $PKG/usr/man -type f -exec gzip -9 {} \; for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - AUTHORS LICENSE README NEWS.md examples \ - $PKG/usr/doc/$PRGNAM-$VERSION +cp -a AUTHORS LICENSE README NEWS.md examples $PKG/usr/doc/$PRGNAM-$VERSION cp $CWD/README $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/samtools/samtools.info b/academic/samtools/samtools.info index eef9473b1e86..40df7ba54612 100644 --- a/academic/samtools/samtools.info +++ b/academic/samtools/samtools.info @@ -1,8 +1,8 @@ PRGNAM="samtools" -VERSION="1.19.2" +VERSION="1.20" HOMEPAGE="http://www.htslib.org" -DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.19.2/samtools-1.19.2.tar.bz2" -MD5SUM="318492d95f5d8cef697442d1be996b77" +DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.20/samtools-1.20.tar.bz2" +MD5SUM="e33f429b57324a55e5cbe0ef9f3a094e" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" |