diff options
| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2014-04-09 16:58:43 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2014-04-09 16:58:43 +0700 |
| commit | 820b8bf747c7847e9d541152121b4f1b19aa2da6 (patch) | |
| tree | fafc49bcc0fa76d270e6a3c955e1f4e6818b90af /academic | |
| parent | d5c3e85ba53b251eb011a3101f49203d9436dbf5 (diff) | |
academic/bwa: Updated for version 0.7.8.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/bwa/bwa.SlackBuild | 11 | ||||
| -rw-r--r-- | academic/bwa/bwa.info | 6 | ||||
| -rw-r--r-- | academic/bwa/slack-desc | 2 |
3 files changed, 8 insertions, 11 deletions
diff --git a/academic/bwa/bwa.SlackBuild b/academic/bwa/bwa.SlackBuild index d38dfbb9fa63..aa7528b5da64 100644 --- a/academic/bwa/bwa.SlackBuild +++ b/academic/bwa/bwa.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=bwa -VERSION=${VERSION:-0.7.7} +VERSION=${VERSION:-0.7.8} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -72,6 +72,7 @@ find -L . \ # Use our CFLAGS/CXXFLAGS sed -i "/^C.*.*FLAGS/s/=/+=/" Makefile +# Thanks to Willy for the -msse2 fix! CFLAGS="$SLKCFLAGS -msse2" \ CXXFLAGS="$SLKCFLAGS" \ make @@ -80,9 +81,7 @@ install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM install -D -m644 $PRGNAM.1 $PKG/usr/man/man1/$PRGNAM.1 mkdir -p $PKG/usr/share/$PRGNAM -cp -a \ - qualfa2fq.pl xa2multi.pl \ - $PKG/usr/share/$PRGNAM +cp -a qualfa2fq.pl xa2multi.pl $PKG/usr/share/$PRGNAM find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true @@ -91,9 +90,7 @@ find $PKG/usr/man -type f -exec gzip -9 {} \; for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - ChangeLog COPYING README.md \ - $PKG/usr/doc/$PRGNAM-$VERSION +cp -a ChangeLog COPYING README.md $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References diff --git a/academic/bwa/bwa.info b/academic/bwa/bwa.info index 6763f3f75b8a..889f92add0f0 100644 --- a/academic/bwa/bwa.info +++ b/academic/bwa/bwa.info @@ -1,8 +1,8 @@ PRGNAM="bwa" -VERSION="0.7.7" +VERSION="0.7.8" HOMEPAGE="http://bio-bwa.sourceforge.net/" -DOWNLOAD="http://downloads.sourceforge.net/bio-bwa/bwa-0.7.7.tar.bz2" -MD5SUM="0fa74b1debe42a12c2d8443dfc64ce6c" +DOWNLOAD="http://downloads.sourceforge.net/bio-bwa/bwa-0.7.8.tar.bz2" +MD5SUM="51ca7a29907022080398b2b88207e33c" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" diff --git a/academic/bwa/slack-desc b/academic/bwa/slack-desc index 9d23eaa17cbd..353aa48a9b0c 100644 --- a/academic/bwa/slack-desc +++ b/academic/bwa/slack-desc @@ -15,5 +15,5 @@ bwa: bwa-short and BWA-SW. The former works for query sequences shorter bwa: than 200bp and the latter for longer sequences up to around 100kbp. bwa: bwa: Home: http://bio-bwa.sourceforge.net/ -bwa: References: /usr/doc/bwa-$VERSION/References +bwa: References: /usr/doc/bwa-0.7.8/References bwa: |