diff options
| author | brobr <sborg63@disroot.org> | 2022-10-14 20:56:36 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2022-10-15 09:21:37 +0700 |
| commit | d556a8734f90cf556c1a3849618fe7eb8dcb04cb (patch) | |
| tree | a07c5b92186d1d95dfaf51e0f6884c05e370e0f8 /academic | |
| parent | c5342ee1242efeca39d8470cc502cf8734471803 (diff) | |
academic/pysam: use shipped htslib-1.15.1
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 3f903d0e9bb9..d277a692b21a 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam VERSION=${VERSION:-0.19.1} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,10 +80,7 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# pysam now at htslib-1.15.1; SBo-htslib is at 1.15.1: -# can use system htslib: -export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX -export HTSLIB_INCLUDE_DIR=/usr/include +# pysam linked to htslib-1.15.1; SBo-htslib is at 1.16 #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* |