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authorPetar Petrov <slackalaxy@gmail.com>2023-09-11 06:35:39 +0900
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2023-09-17 00:10:15 +0700
commitba310bcb486d6f46b3352c98b9685c636710350d (patch)
treea06c2f96daa9fbc6c2619a2fd7e9bf4575ea7be7 /academic
parentda7369ac9c9fa1cdd8753d4bb7833839e30bc309 (diff)
academic/IGV: Updated for version 2.16.2.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/IGV/IGV.SlackBuild4
-rw-r--r--academic/IGV/IGV.info6
2 files changed, 6 insertions, 4 deletions
diff --git a/academic/IGV/IGV.SlackBuild b/academic/IGV/IGV.SlackBuild
index bd3d661ab52f..38a9d08e7eab 100644
--- a/academic/IGV/IGV.SlackBuild
+++ b/academic/IGV/IGV.SlackBuild
@@ -25,7 +25,7 @@
cd $(dirname $0) ; CWD=$(pwd)
PRGNAM=IGV
-VERSION=${VERSION:-2.16.1}
+VERSION=${VERSION:-2.16.2}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
PKGTYPE=${PKGTYPE:-tgz}
@@ -71,6 +71,8 @@ find -L . \
# Place it in /opt and make a symlink later
mkdir -p $PKG/opt/$PRGNAM
cp -a $JDK lib igv.args igv.sh igv_hidpi.sh $PKG/opt/$PRGNAM
+chmod 0755 $PKG/opt/IGV/jdk-11/lib/{jli,server}/*.so
+chmod 0755 $PKG/opt/IGV/jdk-11/lib/*.so
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
diff --git a/academic/IGV/IGV.info b/academic/IGV/IGV.info
index de6a065b9638..23341260cc4a 100644
--- a/academic/IGV/IGV.info
+++ b/academic/IGV/IGV.info
@@ -1,10 +1,10 @@
PRGNAM="IGV"
-VERSION="2.16.1"
+VERSION="2.16.2"
HOMEPAGE="http://software.broadinstitute.org/software/igv/home"
DOWNLOAD="UNSUPPORTED"
MD5SUM=""
-DOWNLOAD_x86_64="https://data.broadinstitute.org/igv/projects/downloads/2.16/IGV_Linux_2.16.1_WithJava.zip"
-MD5SUM_x86_64="0d4e11ff4eb6cebe72605d3328927e4c"
+DOWNLOAD_x86_64="https://data.broadinstitute.org/igv/projects/downloads/2.16/IGV_Linux_2.16.2_WithJava.zip"
+MD5SUM_x86_64="19adb2bac44d46373fc021fbad3cce10"
REQUIRES=""
MAINTAINER="Petar Petrov"
EMAIL="slackalaxy@gmail.com"