aboutsummaryrefslogtreecommitdiff
path: root/academic
diff options
context:
space:
mode:
authorPedro Mendes <pedro@gepasi.org>2016-11-24 21:59:17 +0000
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2016-11-26 11:47:24 +0700
commit37854d6e4d41ae68302f304c3c5109f41d7d3287 (patch)
treebdf803739ec652d20c15d65b825dbfe99f93ebac /academic
parent197beb8a2dbd7834e94e5ff05148311e15d7dd01 (diff)
academic/copasi: Updated for version 4.17.135.
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/copasi/README8
-rw-r--r--academic/copasi/copasi.SlackBuild19
-rw-r--r--academic/copasi/copasi.info10
3 files changed, 18 insertions, 19 deletions
diff --git a/academic/copasi/README b/academic/copasi/README
index e32cb06d9c9db..d8e33bc6bcf36 100644
--- a/academic/copasi/README
+++ b/academic/copasi/README
@@ -1,4 +1,4 @@
-COPASI is a package for modeling and simulation of biochemical networks,
+COPASI is a package for modeling and simulation of biochemical networks,
popular in the field of systems biology.
COPASI is a stand-alone program that simulates models of biochemical
@@ -11,6 +11,6 @@ animations of network diagrams. COPASI's GUI is based on QT, but a
command line version is also included that allows for processing
computations in batch mode.
-COPASI is a collaboration between research groups at the Virginia
-Bioinformatics Institute, University of Heidelberg, University of
-Manchester and previously in the EML-Research.
+COPASI is a collaboration between research groups at the Biocomplexity
+Institute at Virginia Tech, University of Heidelberg, University of
+Connecticut, University of Manchester, and previously the EML-Research.
diff --git a/academic/copasi/copasi.SlackBuild b/academic/copasi/copasi.SlackBuild
index c8d7c71843e79..58752ab156ef9 100644
--- a/academic/copasi/copasi.SlackBuild
+++ b/academic/copasi/copasi.SlackBuild
@@ -23,12 +23,12 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=copasi
-VERSION=${VERSION:-4.16.104}
+VERSION=${VERSION:-4.17.135}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
case "$(uname -m)" in
- i?86) ARCH=i486 ;;
+ i?86) ARCH=i586 ;;
arm*) ARCH=arm ;;
*) ARCH=$(uname -m) ;;
esac
@@ -38,12 +38,12 @@ TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
-if [ "$ARCH" = "i486" ]; then
+if [ "$ARCH" = "i586" ]; then
BINNAME="Linux-32bit"
elif [ "$ARCH" = "x86_64" ]; then
BINNAME="Linux-64bit"
else
- echo "$ARCH is not supported by the $PRGNAM build script..."
+ echo "$ARCH is not supported by the $PRGNAM build script."
exit 1
fi
@@ -55,16 +55,15 @@ set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
-rm -rf $PRGNAM-$VERSION
+rm -rf COPASI-$VERSION-$BINNAME
tar xvf $CWD/COPASI-$VERSION-$BINNAME.tar.gz
-mv COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION
-cd $PRGNAM-$VERSION
+cd COPASI-$VERSION-$BINNAME
chown -R root:root .
find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
- -exec chmod 755 {} \; -o \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+ -o -perm 511 \) -exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
- -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
mkdir -p $PKG/usr/bin $PKG/usr/share/{copasi,pixmaps,applications}
cp -a bin/* $PKG/usr/bin/
diff --git a/academic/copasi/copasi.info b/academic/copasi/copasi.info
index a7ae0162e4663..a16000eb047a5 100644
--- a/academic/copasi/copasi.info
+++ b/academic/copasi/copasi.info
@@ -1,10 +1,10 @@
PRGNAM="copasi"
-VERSION="4.16.104"
+VERSION="4.17.135"
HOMEPAGE="http://www.copasi.org"
-DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-104/COPASI-4.16.104-Linux-32bit.tar.gz"
-MD5SUM="0aba3e72f8c245d306926f271b998da8"
-DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-104/COPASI-4.16.104-Linux-64bit.tar.gz"
-MD5SUM_x86_64="8525a65d620bafa5da3045fbf12ba6b5"
+DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-32bit.tar.gz"
+MD5SUM="d3d03eb1e4b24613d930b9b2adec5ee7"
+DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-64bit.tar.gz"
+MD5SUM_x86_64="af6285199dcf877ad3450333c2b93201"
REQUIRES=""
MAINTAINER="Pedro Mendes"
EMAIL="pedro@gepasi.org"