diff options
| author | Rob van Nues <sborg63@disroot.org> | 2019-01-27 12:05:09 -0600 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2019-02-02 08:12:10 +0700 |
| commit | 18da22d1e25386357dd7842c8e42500ba42b6af6 (patch) | |
| tree | 6a437a15a3beb8b452a9fc31f80ff7b3d29b6d48 /academic | |
| parent | 8ff4ce2fddc5751d387ff4cf240fcc50fb4932ba (diff) | |
academic/STAR: Updated for version 2.7.0a.
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/STAR/README | 5 | ||||
| -rw-r--r-- | academic/STAR/STAR.SlackBuild | 4 | ||||
| -rw-r--r-- | academic/STAR/STAR.info | 6 | ||||
| -rw-r--r-- | academic/STAR/slack-desc | 8 |
4 files changed, 13 insertions, 10 deletions
diff --git a/academic/STAR/README b/academic/STAR/README index 24272d0a1f558..7d410d628f47f 100644 --- a/academic/STAR/README +++ b/academic/STAR/README @@ -2,6 +2,9 @@ STAR aligns short and long RNA-seq reads to a reference genome using uncompressed suffix arrays, resulting in fast, accurate mapping. STAR is capable of unbiased de novo detection of canonical splice junctions, can discover non-canonical splices and chimeric (fusion) -transcripts and can map full-length RNA sequences. +transcripts and can map full-length RNA sequences. Comes with +STARsolo for: mapping, demultiplexing and gene quantification for +single cell RNA-seq (See STARmanual). + Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886 diff --git a/academic/STAR/STAR.SlackBuild b/academic/STAR/STAR.SlackBuild index b5818beaec8a6..889cb508b300e 100644 --- a/academic/STAR/STAR.SlackBuild +++ b/academic/STAR/STAR.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for STAR -# Copyright 2018 Rob van Nues +# Copyright 2018-2019 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=STAR -VERSION=${VERSION:-2.6.1d} +VERSION=${VERSION:-2.7.0a} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/STAR/STAR.info b/academic/STAR/STAR.info index 8929bb763d113..a32b34aee2330 100644 --- a/academic/STAR/STAR.info +++ b/academic/STAR/STAR.info @@ -1,10 +1,10 @@ PRGNAM="STAR" -VERSION="2.6.1d" +VERSION="2.7.0a" HOMEPAGE="https://github.com/alexdobin/STAR" DOWNLOAD="UNSUPPORTED" MD5SUM="" -DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.6.1d/STAR-2.6.1d.tar.gz" -MD5SUM_x86_64="c74965ee85f551641175b63f8a26a6f5" +DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.7.0a/STAR-2.7.0a.tar.gz" +MD5SUM_x86_64="318f0ef28bb85f3a2306f4b0796e0cf5" REQUIRES="" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" diff --git a/academic/STAR/slack-desc b/academic/STAR/slack-desc index 433a7dfbb06ad..ac9ff6cc26b66 100644 --- a/academic/STAR/slack-desc +++ b/academic/STAR/slack-desc @@ -9,10 +9,10 @@ STAR: STAR (Spliced Transcripts Alignment to a Reference) STAR: STAR: STAR aligns short and long RNA-seq reads to a reference genome using -STAR: uncompressed suffix arrays, resulting in fast, accurate mapping. -STAR: STAR is capable of unbiased de novo detection of canonical junctions, -STAR: can discover non-canonical splices and chimeric (fusion) transcripts -STAR: and can map full-length RNA sequences. +STAR: uncompressed suffix arrays, resulting in fast, accurate mapping. STAR +STAR: is capable of unbiased de novo detection of canonical junctions, can +STAR: discover non-canonical splices and chimeric transcripts, can map full- +STAR: length RNA sequences and can be used for single cell RNA-seq mapping. STAR: STAR: https://github.com/alexdobin/STAR STAR: Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886 |