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authorRob van Nues <sborg63@disroot.org>2020-03-07 07:30:51 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2020-03-07 07:30:51 +0700
commita0d23c9fd4256bd93e5441e760df753407954346 (patch)
tree7b46abdb437bd2dc2adf5672e0ef25e81c8e70da /academic
parent463c49a57d99a0cd68e106f6bb34cc18a14002c9 (diff)
academic/pysam: Updated for version 0.15.4.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/pysam/pysam.SlackBuild9
-rw-r--r--academic/pysam/pysam.info8
2 files changed, 9 insertions, 8 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild
index f5c3d8615e717..91c17b0e1a7fd 100644
--- a/academic/pysam/pysam.SlackBuild
+++ b/academic/pysam/pysam.SlackBuild
@@ -24,7 +24,7 @@
PRGNAM=pysam
-VERSION=${VERSION:-0.15.3}
+VERSION=${VERSION:-0.15.4}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -74,9 +74,10 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-#use system htslib instead
-export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
-export HTSLIB_INCLUDE_DIR=/usr/include
+###When pysam gets linked to htslib-1.10 this can be done again:
+##use system htslib instead:
+#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
+#export HTSLIB_INCLUDE_DIR=/usr/include
if $PYTHON2; then
python setup.py install --root=$PKG
diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info
index a7747f8d207c7..8e87762f0fea3 100644
--- a/academic/pysam/pysam.info
+++ b/academic/pysam/pysam.info
@@ -1,10 +1,10 @@
PRGNAM="pysam"
-VERSION="0.15.3"
+VERSION="0.15.4"
HOMEPAGE="https://github.com/pysam-developers/pysam"
-DOWNLOAD="https://github.com/pysam-developers/pysam/archive/v0.15.3/pysam-0.15.3.tar.gz"
-MD5SUM="f8586362c20c754bc698c04e32e11a63"
+DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.15.4.tar.gz"
+MD5SUM="fed157466d6e267e32593119c05247b2"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
-REQUIRES="python3 htslib"
+REQUIRES="python3-Cython"
MAINTAINER="Rob van Nues"
EMAIL="sborg63@disroot.org"