diff options
| author | Rob van Nues <sborg63@disroot.org> | 2020-04-24 08:04:37 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2020-04-24 08:04:52 +0700 |
| commit | 1cae1105203f37cf75d8e23bc0e3f47e1e565376 (patch) | |
| tree | 56f9c4a53d53c2ee8872c3f82f45688684a07e5b /academic | |
| parent | f30839492c4cb2e51295963e1733761483843084 (diff) | |
academic/rpy2: Updated for version 3.3.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/rpy2/README | 4 | ||||
| -rw-r--r-- | academic/rpy2/rpy2.SlackBuild | 25 | ||||
| -rw-r--r-- | academic/rpy2/rpy2.info | 8 |
3 files changed, 30 insertions, 7 deletions
diff --git a/academic/rpy2/README b/academic/rpy2/README index 62656e95fb8e..a770dd177603 100644 --- a/academic/rpy2/README +++ b/academic/rpy2/README @@ -15,3 +15,7 @@ jupyter notebooks or ipython. NOTE: R needs to be compiled with the shared library flag, thus: build R on SBo with R_SHLIB=yes and BLAS_SHLIB=yes + +(See also the notes in the rpy2.Slackbuild) + +documentation:https://rpy2.github.io/doc/latest/html/index.html diff --git a/academic/rpy2/rpy2.SlackBuild b/academic/rpy2/rpy2.SlackBuild index 605121ff72b3..d3ee5a2f4e5c 100644 --- a/academic/rpy2/rpy2.SlackBuild +++ b/academic/rpy2/rpy2.SlackBuild @@ -22,7 +22,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=rpy2 -VERSION=${VERSION:-3.2.7} +VERSION=${VERSION:-3.3.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -58,7 +58,7 @@ set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf $PRGNAM-v$VERSION +rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION chown -R root:root . @@ -68,9 +68,28 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +## make sure there is R +if ! [ -x "$(command -v R)" ]; then + echo 'Error: R is not installed.' >&2 + exit 1 +fi + ## make sure that R has been compiled with ## --enable-R-shlib ## --enable-BLAS-shlib +RHOMLIB=$(R RHOME)/lib +echo "R libs are in $RHOMLIB" + +if ! [ "$(readelf -h $RHOMLIB/libR*.so | grep DYN)" ]; then + echo "Error: R is not compiled with shared libraries." >&2 + exit 1 +fi + +## this removes an error message from setup.py +## https://github.com/rpy2/rpy2/issues/675 +export LD_LIBRARY_PATH="${RHOMLIB}:${LD_LIBRARY_PATH}" +echo "LD_LIBRARY_PATH set to ${LD_LIBRARY_PATH}" + python3 setup.py build install --root=$PKG mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION @@ -78,7 +97,7 @@ cp -a AUTHORS gpl-2.0.txt NEWS README* $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild ## to facilitate dynamic linking with R, -## libR.so and libRblas.so need to be found +## libR.so and libRblas.so still need to be found ## https://github.com/rpy2/rpy2/issues/675 mkdir -p $PKG/etc/ld.so.conf.d/ cat $CWD/Rlibs.conf > $PKG/etc/ld.so.conf.d/Rlibs.conf diff --git a/academic/rpy2/rpy2.info b/academic/rpy2/rpy2.info index a09d994c5f25..2f85d61c0dc9 100644 --- a/academic/rpy2/rpy2.info +++ b/academic/rpy2/rpy2.info @@ -1,10 +1,10 @@ PRGNAM="rpy2" -VERSION="3.2.7" +VERSION="3.3.1" HOMEPAGE="https://rpy2.github.io/" -DOWNLOAD="https://pypi.python.org/packages/source/r/rpy2/rpy2-3.2.7.tar.gz" -MD5SUM="eaa65c233eb2d60678dabe2b58894aa4" +DOWNLOAD="https://pypi.python.org/packages/source/r/rpy2/rpy2-3.3.1.tar.gz" +MD5SUM="5ff6f3049d5c9d5a23266e27300d0ca0" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="R cffi Jinja2 pytest simplegeneric tzlocal" +REQUIRES="R cffi Jinja2 pytest tzlocal" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" |