diff options
| author | brobr <sborg63@disroot.org> | 2023-12-24 14:16:12 +0000 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2023-12-29 18:49:34 +0700 |
| commit | e470a6706925fd97689e8a29afb17a09b2602448 (patch) | |
| tree | 1e010c81fc79de03d4cf563935095a5fa071cd16 /academic | |
| parent | 8f163f625869c998621c733e8377c6153fa66f7e (diff) | |
academic/samtools: upgrade to version 1.19
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/samtools/samtools.SlackBuild | 13 | ||||
| -rw-r--r-- | academic/samtools/samtools.info | 6 |
2 files changed, 8 insertions, 11 deletions
diff --git a/academic/samtools/samtools.SlackBuild b/academic/samtools/samtools.SlackBuild index 4390f4ca4f33..d7343d27ddb4 100644 --- a/academic/samtools/samtools.SlackBuild +++ b/academic/samtools/samtools.SlackBuild @@ -25,14 +25,14 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=samtools -VERSION=${VERSION:-1.18} -HTSLIBV=${HTSLIBV:-1.18} +VERSION=${VERSION:-1.19} +HTSLIBV=${HTSLIBV:-1.19} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} -# Some applications still rely on the legacy samtools API instead of using htslib -# exclusively, in that case, install the headers in /usr/include/bam and the static +# Some applications still rely on the legacy samtools API instead of using htslib +# exclusively, in that case, install the headers in /usr/include/bam and the static # libbam library as well by declaring (uncommenting): #SAMLIB="yes" # and commenting out: @@ -51,9 +51,6 @@ if [ -z "$ARCH" ]; then esac fi -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 @@ -126,7 +123,7 @@ for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; r mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - AUTHORS LICENSE README INSTALL NEWS examples \ + AUTHORS LICENSE README NEWS.md examples \ $PKG/usr/doc/$PRGNAM-$VERSION cp $CWD/README $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/samtools/samtools.info b/academic/samtools/samtools.info index da9635f1a69b..20e0a50ae310 100644 --- a/academic/samtools/samtools.info +++ b/academic/samtools/samtools.info @@ -1,8 +1,8 @@ PRGNAM="samtools" -VERSION="1.18" +VERSION="1.19" HOMEPAGE="http://www.htslib.org" -DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.18/samtools-1.18.tar.bz2" -MD5SUM="eef1378084dc3888f6dd59f522886d6c" +DOWNLOAD="https://github.com/samtools/samtools/releases/download/1.19/samtools-1.19.tar.bz2" +MD5SUM="6cb3383c6d454eb13752e293926b8b26" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" |